Annotation Detail for FANCM
Basic Information Top
| Gene Symbol: | FANCM ( FAAP250,KIAA1596,MGC176453 ) |
|---|---|
| Gene Full Name: | Fanconi anemia, complementation group M |
| Band: | 14q21.2 |
| Quick Links | Entrez ID:57697; OMIM: 609644; Uniprot ID:FANCM_HUMAN; ENSEMBL ID: ENSG00000187790; HGNC ID: 23168 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.509229
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 8 / 564012 | 14 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 17 / 1939121 | 8 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 51 / 3360307 | 15 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 7 / 1100989 | 6 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 |  |
| ovary | 1 / 102051 | 9 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 23 / 330442 | 69 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_32_P79504
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.3 ± 0.35 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.13 ± 0.31 | |
| Basal Part of Pons | 5.3 ± 0.28 | |
| Cerebellar Cortex | 5.41 ± 0.31 | |
| Cerebellar Nuclei | 5.06 ± 0.4 | |
| Claustrum | 5 ± 0.82 | |
| Epithalamus | 5.07 ± 0.23 | |
| Frontal Lobe | 5.03 ± 0.41 | |
| Globus Pallidus | 4.86 ± 0.24 | |
| Hypothalamus | 5.07 ± 0.47 | |
| Insula | 5.03 ± 0.29 | |
| Limbic Lobe | 5.18 ± 0.48 | |
| Mesencephalon | 5.07 ± 0.42 | |
| Myelencephalon | 5.09 ± 0.44 | |
| Occipital Lobe | 5.31 ± 0.34 | |
| Parietal Lobe | 5.14 ± 0.4 | |
| Pontine Tegmentum | 4.98 ± 0.45 | |
| Striatum | 5.44 ± 0.45 | |
| Subthalamus | 5.19 ± 0.8 | |
| Temporal Lobe | 5.07 ± 0.38 | |
| Thalamus | 4.82 ± 0.32 | |
| White Matter | 5.31 ± 0.11 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Fancm | CB | Cerebellum | 4.73 | |
| 4.67 | | |||
| Fancm | CTX | Cerebral cortex | 1.68 | |
| 1.79 | | |||
| Fancm | HIP | Hippocampal region | 1.06 | |
| 1.39 | | |||
| Fancm | HPF | Hippocampal formation | 1.2 | |
| 1.4 | | |||
| Fancm | HY | Hypothalamus | 0.52 | |
| 0.36 | | |||
| Fancm | LSX | Lateral septal complex | 0.7 | |
| 0.58 | | |||
| Fancm | MB | Midbrain | 1.49 | |
| 1.65 | | |||
| Fancm | MY | Medulla | 5.82 | |
| 5.53 | | |||
| Fancm | OLF | Olfactory bulb | 1.8 | |
| 1.29 | | |||
| Fancm | P | Pons | 3.97 | |
| 3.54 | | |||
| Fancm | PAL | Pallidum | 0.39 | |
| 0.39 | | |||
| Fancm | RHP | Retrohippocampal region | 1.46 | |
| 1.37 | | |||
| Fancm | sAMY | Striatum-like amygdalar nuclei | 0.26 | |
| 0.35 | | |||
| Fancm | STR | Striatum | 0.52 | |
| 0.5 | | |||
| Fancm | STRd | Striatum dorsal region | 0.52 | |
| 0.53 | | |||
| Fancm | STRv | Striatum ventral region | 0.58 | |
| 0.39 | | |||
| Fancm | TH | Thalamus | 1.3 | |
| 0.96 | |