AutismKB 2.0

Annotation Detail for BAI3


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Basic Information Top
Gene Symbol:BAI3 ( KIAA0550,MGC133100 )
Gene Full Name: brain-specific angiogenesis inhibitor 3
Band: 6q12
Quick LinksEntrez ID:577; OMIM: 602684; Uniprot ID:BAI3_HUMAN; ENSEMBL ID: ENSG00000135298; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus57 / 564012101
neonate0 / 310970 
infant1 / 2362042
juvenile2 / 5555635
adult20 / 193912110
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor6 / 26384522
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia4 / 9725041
normal154 / 336030745
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS6 / 12568047
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain136 / 1100989123
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye2 / 2110549
heart0 / 896260 
intestine0 / 2344720 
kidney2 / 2117779
larynx0 / 241450 
liver0 / 2077430 
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis5 / 33044215
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205638_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.1
Adipocyte4.1
AdrenalCortex4.45
Adrenalgland3.5
Amygdala179.5
Appendix4.35
AtrioventricularNode3.35
BDCA4+_DentriticCells4.45
Bonemarrow4.15
BronchialEpithelialCells4.05
CD105+_Endothelial4.15
CD14+_Monocytes4.45
CD19+_BCells(neg._sel.)4.4
CD33+_Myeloid5.25
CD34+5.25
CD4+_Tcells4.45
CD56+_NKCells4.85
CD71+_EarlyErythroid3.9
CD8+_Tcells3.95
CardiacMyocytes5.55
Caudatenucleus28.8
Cerebellum3.95
CerebellumPeduncles10.2
CiliaryGanglion3.05
CingulateCortex28.45
Colorectaladenocarcinoma4.2
DorsalRootGanglion3.3
FetalThyroid4.05
Fetalbrain115.55
Fetalliver3.6
Fetallung3.4
GlobusPallidus20.15
Heart5.4
Hypothalamus29.85
Kidney3.4
Leukemia_chronicMyelogenousK-5623.75
Leukemia_promyelocytic-HL-603.65
Leukemialymphoblastic(MOLT-4)3.3
Liver5.55
Lung4.55
Lymphnode3.5
Lymphoma_burkitts(Daudi)5.35
Lymphoma_burkitts(Raji)5.9
MedullaOblongata21.3
OccipitalLobe74.15
OlfactoryBulb3.3
Ovary2.8
Pancreas3.35
PancreaticIslet4.45
ParietalLobe36.5
Pituitary6.5
Placenta4.25
Pons6.7
PrefrontalCortex116.45
Prostate4.85
Salivarygland3.35
SkeletalMuscle4.95
Skin3.3
SmoothMuscle4.7
Spinalcord7
SubthalamicNucleus30
SuperiorCervicalGanglion4.8
TemporalLobe15.45
Testis3.6
TestisGermCell3.5
TestisIntersitial3.5
TestisLeydigCell4.15
TestisSeminiferousTubule3.55
Thalamus13.6
Thymus3.25
Thyroid5.2
Tongue4.25
Tonsil4.05
Trachea3.5
TrigeminalGanglion4.25
Uterus3.4
UterusCorpus3.8
WholeBlood4.5
Wholebrain40.75
colon4.15
pineal_day5.18
pineal_night5.1
retina5.025
small_intestine4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P252556
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.2 ± 0.78
Basal Forebrain8.3 ± 0.37
Basal Part of Pons8.07 ± 0.66
Cerebellar Cortex8.34 ± 0.24
Cerebellar Nuclei7.42 ± 0.54
Claustrum7.8 ± 0.85
Epithalamus7.68 ± 0.58
Frontal Lobe8.53 ± 0.46
Globus Pallidus6.77 ± 0.24
Hypothalamus8.72 ± 0.47
Insula8.72 ± 0.45
Limbic Lobe8.22 ± 0.85
Mesencephalon8.01 ± 0.53
Myelencephalon8.13 ± 0.69
Occipital Lobe7.58 ± 0.77
Parietal Lobe8.17 ± 0.63
Pontine Tegmentum8.31 ± 0.69
Striatum7.73 ± 0.83
Subthalamus7.29 ± 0.85
Temporal Lobe8.52 ± 0.53
Thalamus8.1 ± 0.44
White Matter6.43 ± 0.68
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Bai3CBCerebellum32.1
85.14
Bai3CTXCerebral cortex100
97.08
Bai3HIPHippocampal region100
100
Bai3HPFHippocampal formation99.8
100
Bai3HYHypothalamus47.3
40.06
Bai3LSXLateral septal complex100
96.07
Bai3MBMidbrain47.89
44.12
Bai3MYMedulla46.89
51.55
Bai3OLFOlfactory bulb92.24
93.57
Bai3PPons38.32
39.85
Bai3PALPallidum50.34
47.38
Bai3RHPRetrohippocampal region100
100
Bai3sAMYStriatum-like amygdalar nuclei89.82
83.73
Bai3STRStriatum100
92.4
Bai3STRdStriatum dorsal region100
94.12
Bai3STRvStriatum ventral region100
91.33
Bai3THThalamus75.04
71.46
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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