AutismKB 2.0

Annotation Detail for KIAA1609


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Basic Information Top
Gene Symbol:KIAA1609 ( MGC25024 )
Gene Full Name: KIAA1609
Band: 16q24.1
Quick LinksEntrez ID:57707; OMIM: NA; Uniprot ID:K1609_HUMAN; ENSEMBL ID: ENSG00000140950; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst1 / 6231916
fetus47 / 56401283
neonate2 / 3109764
infant0 / 236200 
juvenile0 / 555560 
adult80 / 193912141
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor8 / 9417884
cervical tumor1 / 3436629
chondrosarcoma1 / 8282312
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor11 / 26384541
glioma1 / 1068839
head and neck tumor9 / 13630266
kidney tumor2 / 6895929
leukemia1 / 9584210
liver tumor2 / 9635920
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal124 / 336030736
ovarian tumor2 / 7668226
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer5 / 10268048
retinoblastoma1 / 4635621
skin tumor2 / 12494916
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone1 / 7165513
bone marrow0 / 488010 
brain34 / 110098930
cervix5 / 48171103
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye10 / 21105447
heart7 / 8962678
intestine3 / 23447212
kidney5 / 21177723
larynx2 / 2414582
liver3 / 20774314
lung13 / 33697438
lymph0 / 442700 
lymph node2 / 9161021
mammary gland12 / 15327178
mouth4 / 6705259
muscle3 / 10771527
nerve0 / 157680 
ovary3 / 10205129
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx3 / 4132872
pituitary gland0 / 165850 
placenta14 / 28082549
prostate8 / 18934542
salivary gland0 / 201550 
skin10 / 21057447
spleen1 / 5395218
stomach1 / 9661910
testis9 / 33044227
thymus4 / 8113149
thyroid2 / 4747342
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus9 / 23287838
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 65438_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.9
Adipocyte9.05
AdrenalCortex13.95
Adrenalgland8.25
Amygdala8.5
Appendix12.2
AtrioventricularNode13.1
BDCA4+_DentriticCells9.25
Bonemarrow10.3
BronchialEpithelialCells11.6
CD105+_Endothelial8.95
CD14+_Monocytes9.95
CD19+_BCells(neg._sel.)9.85
CD33+_Myeloid11.5
CD34+11
CD4+_Tcells9.85
CD56+_NKCells9.5
CD71+_EarlyErythroid8.8
CD8+_Tcells9
CardiacMyocytes13.35
Caudatenucleus8.2
Cerebellum7.5
CerebellumPeduncles11.8
CiliaryGanglion8.4
CingulateCortex9.85
Colorectaladenocarcinoma9.4
DorsalRootGanglion9.9
FetalThyroid12.15
Fetalbrain8.9
Fetalliver8.05
Fetallung7.05
GlobusPallidus7.95
Heart15.45
Hypothalamus9.3
Kidney9.15
Leukemia_chronicMyelogenousK-5628.85
Leukemia_promyelocytic-HL-608.1
Leukemialymphoblastic(MOLT-4)7.1
Liver13.7
Lung9.8
Lymphnode7.55
Lymphoma_burkitts(Daudi)12.5
Lymphoma_burkitts(Raji)13.75
MedullaOblongata8.3
OccipitalLobe8.15
OlfactoryBulb7.15
Ovary7.95
Pancreas8.2
PancreaticIslet10.1
ParietalLobe10.85
Pituitary10.65
Placenta9.3
Pons9.75
PrefrontalCortex10.95
Prostate10.2
Salivarygland8.7
SkeletalMuscle16.75
Skin11.4
SmoothMuscle10.4
Spinalcord9.35
SubthalamicNucleus9.25
SuperiorCervicalGanglion20
TemporalLobe8.75
Testis7.8
TestisGermCell7.6
TestisIntersitial8.65
TestisLeydigCell10.55
TestisSeminiferousTubule7.95
Thalamus9.6
Thymus6.55
Thyroid10.8
Tongue14.9
Tonsil9.2
Trachea7.4
TrigeminalGanglion13.4
Uterus7.2
UterusCorpus10.55
WholeBlood9.9
Wholebrain7.25
colon8.8
pineal_day10.92
pineal_night10.46
retina11.05
small_intestine8.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P182511
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.91 ± 0.66
Basal Forebrain3.76 ± 0.39
Basal Part of Pons3.51 ± 0.46
Cerebellar Cortex3.92 ± 0.53
Cerebellar Nuclei3.57 ± 0.41
Claustrum3.6 ± 0.47
Epithalamus3.52 ± 0.66
Frontal Lobe3.86 ± 0.61
Globus Pallidus3.76 ± 0.42
Hypothalamus3.56 ± 0.46
Insula3.5 ± 0.44
Limbic Lobe4.08 ± 0.65
Mesencephalon3.83 ± 0.72
Myelencephalon3.93 ± 0.6
Occipital Lobe4.11 ± 0.48
Parietal Lobe3.81 ± 0.58
Pontine Tegmentum3.86 ± 0.56
Striatum3.9 ± 0.75
Subthalamus4.02 ± 1.16
Temporal Lobe3.89 ± 0.57
Thalamus3.8 ± 0.52
White Matter2.57 ± 0.75
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
4632415K11RikCBCerebellum1.71
2.09
4632415K11RikCTXCerebral cortex7.06
4.79
4632415K11RikHIPHippocampal region13.62
12.14
4632415K11RikHPFHippocampal formation10.77
8.97
4632415K11RikHYHypothalamus0.71
0.49
4632415K11RikLSXLateral septal complex2.85
1.69
4632415K11RikMBMidbrain1.09
1.28
4632415K11RikMYMedulla1.52
2.29
4632415K11RikOLFOlfactory bulb3.88
2.51
4632415K11RikPPons2.1
3.18
4632415K11RikPALPallidum1.49
1.16
4632415K11RikRHPRetrohippocampal region5.37
4.09
4632415K11RiksAMYStriatum-like amygdalar nuclei5.5
3.8
4632415K11RikSTRStriatum2.57
1.76
4632415K11RikSTRdStriatum dorsal region2.38
1.7
4632415K11RikSTRvStriatum ventral region1.71
1.11
4632415K11RikTHThalamus2.06
1.57
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00007079 33 11 43 SFCSQFLPEEQAEIDQLFDALSSDKNSPNVSSK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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