Annotation Detail for ZFYVE28
Basic Information Top
| Gene Symbol: | ZFYVE28 ( LYST2,MGC43699,MGC61592 ) |
|---|---|
| Gene Full Name: | zinc finger, FYVE domain containing 28 |
| Band: | 4p16.3 |
| Quick Links | Entrez ID:57732; OMIM: NA; Uniprot ID:LST2_HUMAN; ENSEMBL ID: ENSG00000159733; HGNC ID: 29334 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.292056
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 6 / 564012 | 10 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 24 / 1939121 | 12 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 49 / 3360307 | 14 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 |  |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 31 / 1100989 | 28 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 5 / 330442 | 15 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_32_P104746
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.49 ± 0.41 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.33 ± 0.32 | |
| Basal Part of Pons | 8.11 ± 0.26 | |
| Cerebellar Cortex | 8.3 ± 0.18 | |
| Cerebellar Nuclei | 7.92 ± 0.43 | |
| Claustrum | 7.27 ± 0.44 | |
| Epithalamus | 6.86 ± 0.45 | |
| Frontal Lobe | 7.86 ± 0.4 | |
| Globus Pallidus | 6.54 ± 0.31 | |
| Hypothalamus | 7.35 ± 0.38 | |
| Insula | 7.91 ± 0.24 | |
| Limbic Lobe | 7.82 ± 0.48 | |
| Mesencephalon | 7.55 ± 0.52 | |
| Myelencephalon | 7.68 ± 0.48 | |
| Occipital Lobe | 8.1 ± 0.39 | |
| Parietal Lobe | 7.81 ± 0.49 | |
| Pontine Tegmentum | 7.73 ± 0.55 | |
| Striatum | 7.38 ± 0.39 | |
| Subthalamus | 8.01 ± 0.27 | |
| Temporal Lobe | 7.88 ± 0.36 | |
| Thalamus | 7.91 ± 0.42 | |
| White Matter | 6.31 ± 0.35 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Zfyve28 | CB | Cerebellum | 47.67 | |
| 58.06 | | |||
| Zfyve28 | CTX | Cerebral cortex | 100 | |
| 75.2 | | |||
| Zfyve28 | HIP | Hippocampal region | 43.31 | |
| 57.1 | | |||
| Zfyve28 | HPF | Hippocampal formation | 55.72 | |
| 53.67 | | |||
| Zfyve28 | HY | Hypothalamus | 12.76 | |
| 8.7 | | |||
| Zfyve28 | LSX | Lateral septal complex | 11.21 | |
| 6.41 | | |||
| Zfyve28 | MB | Midbrain | 23.54 | |
| 19.49 | | |||
| Zfyve28 | MY | Medulla | 29.27 | |
| 27.16 | | |||
| Zfyve28 | OLF | Olfactory bulb | 97.03 | |
| 83.63 | | |||
| Zfyve28 | P | Pons | 29.11 | |
| 27.63 | | |||
| Zfyve28 | PAL | Pallidum | 18.99 | |
| 13.93 | | |||
| Zfyve28 | RHP | Retrohippocampal region | 70.78 | |
| 48.96 | | |||
| Zfyve28 | sAMY | Striatum-like amygdalar nuclei | 27.45 | |
| 15.19 | | |||
| Zfyve28 | STR | Striatum | 100 | |
| 77.6 | | |||
| Zfyve28 | STRd | Striatum dorsal region | 100 | |
| 86.4 | | |||
| Zfyve28 | STRv | Striatum ventral region | 100 | |
| 77.4 | | |||
| Zfyve28 | TH | Thalamus | 65.28 | |
| 49.97 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| LST2_HUMAN_15 | 8 | 15 | 22 | SDPQLLAR | PRIDE |