AutismKB 2.0

Annotation Detail for SUGP1


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Basic Information Top
Gene Symbol:SUGP1 ( DKFZp434E2216,F23858,RBP,SF4 )
Gene Full Name: SURP and G patch domain containing 1
Band: 19p13
Quick LinksEntrez ID:57794; OMIM: 607992; Uniprot ID:SUGP1_HUMAN; ENSEMBL ID: ENSG00000105705; HGNC ID: 18643
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst1 / 6231916
fetus31 / 56401254
neonate3 / 3109796
infant3 / 23620127
juvenile8 / 55556143
adult123 / 193912163
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor4 / 12794312
bladder carcinoma0 / 174750 
breast (mammary gland) tumor7 / 9417874
cervical tumor4 / 34366116
chondrosarcoma3 / 8282336
colorectal tumor8 / 11424670
esophageal tumor1 / 1729057
gastrointestinal tumor9 / 11936975
germ cell tumor31 / 263845117
glioma10 / 10688393
head and neck tumor6 / 13630244
kidney tumor11 / 68959159
leukemia2 / 9584220
liver tumor7 / 9635972
lung tumor4 / 10312738
lymphoma6 / 7175583
non-neoplasia7 / 9725071
normal266 / 336030779
ovarian tumor4 / 7668252
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS21 / 125680167
prostate cancer2 / 10268019
retinoblastoma8 / 46356172
skin tumor3 / 12494924
soft tissue/muscle tissue tumor12 / 12519195
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland6 / 33197180
ascites3 / 4001574
bladder2 / 2975767
blood8 / 12347864
bone4 / 7165555
bone marrow2 / 4880140
brain100 / 110098990
cervix8 / 48171166
connective tissue12 / 14925580
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus2 / 2020998
eye12 / 21105456
heart8 / 8962689
intestine20 / 23447285
kidney23 / 211777108
larynx0 / 241450 
liver12 / 20774357
lung19 / 33697456
lymph1 / 4427022
lymph node3 / 9161032
mammary gland7 / 15327145
mouth2 / 6705229
muscle10 / 10771592
nerve1 / 1576863
ovary6 / 10205158
pancreas6 / 21481227
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland2 / 16585120
placenta24 / 28082585
prostate8 / 18934542
salivary gland0 / 201550 
skin8 / 21057437
spleen12 / 53952222
stomach8 / 9661982
testis59 / 330442178
thymus18 / 81131221
thyroid7 / 47473147
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord1 / 1368073
uterus18 / 23287877
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209547_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts16.6
Adipocyte9.25
AdrenalCortex11.45
Adrenalgland7.8
Amygdala18.2
Appendix10.45
AtrioventricularNode7.9
BDCA4+_DentriticCells18.35
Bonemarrow10.2
BronchialEpithelialCells9.95
CD105+_Endothelial15.7
CD14+_Monocytes17.95
CD19+_BCells(neg._sel.)26.25
CD33+_Myeloid19.55
CD34+20.25
CD4+_Tcells22.65
CD56+_NKCells43.5
CD71+_EarlyErythroid17.9
CD8+_Tcells23.55
CardiacMyocytes11.85
Caudatenucleus8.5
Cerebellum8.35
CerebellumPeduncles11.75
CiliaryGanglion7.95
CingulateCortex11.85
Colorectaladenocarcinoma11.85
DorsalRootGanglion11.15
FetalThyroid14.2
Fetalbrain12.1
Fetalliver8.3
Fetallung8.2
GlobusPallidus9.15
Heart14.1
Hypothalamus11.75
Kidney5.75
Leukemia_chronicMyelogenousK-56210.55
Leukemia_promyelocytic-HL-608.45
Leukemialymphoblastic(MOLT-4)8.55
Liver19.7
Lung48.9
Lymphnode9.95
Lymphoma_burkitts(Daudi)11.7
Lymphoma_burkitts(Raji)17.55
MedullaOblongata8
OccipitalLobe8.2
OlfactoryBulb8.1
Ovary5.85
Pancreas10.65
PancreaticIslet15.75
ParietalLobe9.5
Pituitary11.7
Placenta10.5
Pons8.7
PrefrontalCortex12.45
Prostate36.3
Salivarygland7.5
SkeletalMuscle10.75
Skin8.3
SmoothMuscle21.25
Spinalcord10.5
SubthalamicNucleus10.6
SuperiorCervicalGanglion17.65
TemporalLobe9.85
Testis22.95
TestisGermCell11.2
TestisIntersitial8.05
TestisLeydigCell14.45
TestisSeminiferousTubule9.35
Thalamus9.95
Thymus9.9
Thyroid15.15
Tongue11.2
Tonsil11.05
Trachea7.85
TrigeminalGanglion11.75
Uterus15.5
UterusCorpus9.75
WholeBlood15.55
Wholebrain14.55
colon9.6
pineal_day25.18
pineal_night17.18
retina14.575
small_intestine8.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10251_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.2 ± 0.35
Basal Forebrain3.89 ± 0.47
Basal Part of Pons3.93 ± 0.38
Cerebellar Cortex4.02 ± 0.47
Cerebellar Nuclei4.11 ± 0.38
Claustrum4.37 ± 0.81
Epithalamus3.98 ± 0.32
Frontal Lobe3.92 ± 0.44
Globus Pallidus3.77 ± 0.53
Hypothalamus3.69 ± 0.5
Insula3.9 ± 0.57
Limbic Lobe4.14 ± 0.54
Mesencephalon4.09 ± 0.55
Myelencephalon3.98 ± 0.51
Occipital Lobe4.14 ± 0.47
Parietal Lobe4.11 ± 0.55
Pontine Tegmentum3.97 ± 0.48
Striatum3.98 ± 0.53
Subthalamus3.9 ± 0.2
Temporal Lobe3.96 ± 0.41
Thalamus4.04 ± 0.44
White Matter4.29 ± 0.44
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Sf4CBCerebellum100
100
Sf4CTXCerebral cortex100
100
Sf4HIPHippocampal region100
100
Sf4HPFHippocampal formation100
100
Sf4HYHypothalamus41.96
43.34
Sf4LSXLateral septal complex100
100
Sf4MBMidbrain52.51
74.49
Sf4MYMedulla27.93
49.79
Sf4OLFOlfactory bulb100
100
Sf4PPons31.14
50.97
Sf4PALPallidum65.05
68.44
Sf4RHPRetrohippocampal region100
100
Sf4sAMYStriatum-like amygdalar nuclei100
100
Sf4STRStriatum95.37
88.12
Sf4STRdStriatum dorsal region83.83
74
Sf4STRvStriatum ventral region100
100
Sf4THThalamus84.37
95.38
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00064005 25 99 123 AQTSTDAPTSAPSAPPSTPTPSAGK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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