AutismKB 2.0

Annotation Detail for HAMP


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Basic Information Top
Gene Symbol:HAMP ( HEPC,HFE2B,LEAP1,PLTR )
Gene Full Name: hepcidin antimicrobial peptide
Band: 19q13.12
Quick LinksEntrez ID:57817; OMIM: 606464; Uniprot ID:HEPC_HUMAN; ENSEMBL ID: ENSG00000105697; HGNC ID: 15598
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus3 / 5640125
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult3 / 19391211
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma2 / 10688318
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal16 / 33603074
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain4 / 11009893
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye2 / 2110549
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver7 / 20774333
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen2 / 5395237
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220491_at
Cell line Expression level Expression bar
721_B_lymphoblasts15.5
Adipocyte17.15
AdrenalCortex35.75
Adrenalgland16.1
Amygdala22.6
Appendix22.35
AtrioventricularNode32.3
BDCA4+_DentriticCells18.4
Bonemarrow23.8
BronchialEpithelialCells17.85
CD105+_Endothelial21.2
CD14+_Monocytes24.15
CD19+_BCells(neg._sel.)21.2
CD33+_Myeloid26.15
CD34+29.85
CD4+_Tcells20.2
CD56+_NKCells20.65
CD71+_EarlyErythroid20.9
CD8+_Tcells19.35
CardiacMyocytes30.3
Caudatenucleus22.05
Cerebellum20.15
CerebellumPeduncles26.9
CiliaryGanglion17
CingulateCortex22.6
Colorectaladenocarcinoma56.1
DorsalRootGanglion37.35
FetalThyroid18.85
Fetalbrain19.3
Fetalliver235.75
Fetallung13.85
GlobusPallidus17.95
Heart182.85
Hypothalamus23.4
Kidney19
Leukemia_chronicMyelogenousK-56217.1
Leukemia_promyelocytic-HL-6017.7
Leukemialymphoblastic(MOLT-4)17
Liver5564.6
Lung12.95
Lymphnode17.2
Lymphoma_burkitts(Daudi)28.7
Lymphoma_burkitts(Raji)90.6
MedullaOblongata17.8
OccipitalLobe18.4
OlfactoryBulb25.55
Ovary18.4
Pancreas34.75
PancreaticIslet78.1
ParietalLobe30.55
Pituitary26.55
Placenta19.9
Pons21.25
PrefrontalCortex35.25
Prostate24.6
Salivarygland22.65
SkeletalMuscle46.45
Skin26.9
SmoothMuscle18
Spinalcord50.85
SubthalamicNucleus31.75
SuperiorCervicalGanglion30.8
TemporalLobe28.1
Testis18.1
TestisGermCell17.35
TestisIntersitial18.55
TestisLeydigCell20.65
TestisSeminiferousTubule17.75
Thalamus32.35
Thymus15.2
Thyroid27.55
Tongue26.4
Tonsil19.95
Trachea24.55
TrigeminalGanglion26.7
Uterus16.35
UterusCorpus19.5
WholeBlood16.25
Wholebrain16.6
colon18.6
pineal_day76.28
pineal_night45.2
retina39.75
small_intestine19.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14747_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.33 ± 1.07
Basal Forebrain1.86 ± 0.31
Basal Part of Pons2.05 ± 0.7
Cerebellar Cortex1.95 ± 0.85
Cerebellar Nuclei2.29 ± 0.63
Claustrum2.9 ± 0.75
Epithalamus1.98 ± 0.67
Frontal Lobe1.96 ± 0.84
Globus Pallidus3.29 ± 0.73
Hypothalamus2.21 ± 0.98
Insula1.75 ± 0.87
Limbic Lobe1.99 ± 0.81
Mesencephalon2.25 ± 0.8
Myelencephalon2.14 ± 0.78
Occipital Lobe2.11 ± 0.81
Parietal Lobe2.08 ± 0.87
Pontine Tegmentum2.04 ± 0.83
Striatum2.23 ± 0.87
Subthalamus2.32 ± 0.28
Temporal Lobe2.12 ± 0.85
Thalamus2.04 ± 0.78
White Matter2.91 ± 0.52
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00804141 13 63 75 FPICIFCCGCCHR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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