AutismKB 2.0

Annotation Detail for CADM3


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Basic Information Top
Gene Symbol:CADM3 ( BIgR,FLJ10698,IGSF4B,NECL1,Necl-1,TSLL1,synCAM3 )
Gene Full Name: cell adhesion molecule 3
Band: 1q23.2
Quick LinksEntrez ID:57863; OMIM: 609743; Uniprot ID:CADM3_HUMAN; ENSEMBL ID: ENSG00000162706; HGNC ID: 17601
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus21 / 56401237
neonate0 / 310970 
infant1 / 2362042
juvenile0 / 555560 
adult115 / 193912159
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor12 / 26384545
glioma4 / 10688337
head and neck tumor1 / 1363027
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal198 / 336030758
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain159 / 1100989144
cervix0 / 481710 
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye12 / 21105456
heart0 / 896260 
intestine1 / 2344724
kidney2 / 2117779
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta18 / 28082564
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis8 / 33044224
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 211677_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts4.3
Adipocyte4.3
AdrenalCortex3.45
Adrenalgland2.85
Amygdala3.7
Appendix3.45
AtrioventricularNode3.45
BDCA4+_DentriticCells3.85
Bonemarrow3.35
BronchialEpithelialCells3.35
CD105+_Endothelial3.45
CD14+_Monocytes3.65
CD19+_BCells(neg._sel.)3.6
CD33+_Myeloid4.4
CD34+4.35
CD4+_Tcells3.7
CD56+_NKCells4.05
CD71+_EarlyErythroid3.2
CD8+_Tcells3.3
CardiacMyocytes4.3
Caudatenucleus3.95
Cerebellum7.4
CerebellumPeduncles14.15
CiliaryGanglion2.5
CingulateCortex4.25
Colorectaladenocarcinoma3.45
DorsalRootGanglion3.8
FetalThyroid3.3
Fetalbrain5.35
Fetalliver2.95
Fetallung2.8
GlobusPallidus2.95
Heart4.35
Hypothalamus3.85
Kidney2.75
Leukemia_chronicMyelogenousK-5623.05
Leukemia_promyelocytic-HL-603
Leukemialymphoblastic(MOLT-4)2.8
Liver5.2
Lung3.8
Lymphnode3
Lymphoma_burkitts(Daudi)4.35
Lymphoma_burkitts(Raji)4.7
MedullaOblongata3.25
OccipitalLobe3.1
OlfactoryBulb10.5
Ovary2.25
Pancreas3.4
PancreaticIslet3.65
ParietalLobe3.85
Pituitary4.05
Placenta3.55
Pons3.4
PrefrontalCortex10.8
Prostate4.05
Salivarygland2.7
SkeletalMuscle5.1
Skin2.6
SmoothMuscle3.9
Spinalcord5.3
SubthalamicNucleus3.4
SuperiorCervicalGanglion4.55
TemporalLobe3.25
Testis2.95
TestisGermCell2.9
TestisIntersitial2.9
TestisLeydigCell3.35
TestisSeminiferousTubule2.95
Thalamus4.2
Thymus2.7
Thyroid4.35
Tongue3.3
Tonsil3.35
Trachea2.85
TrigeminalGanglion3.95
Uterus2.85
UterusCorpus3.05
WholeBlood3.75
Wholebrain4.7
colon3.5
pineal_day4.28
pineal_night4.32
retina4.5
small_intestine3.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P201156
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.85 ± 0.41
Basal Forebrain7.58 ± 0.31
Basal Part of Pons8.48 ± 0.19
Cerebellar Cortex8.43 ± 0.17
Cerebellar Nuclei7.88 ± 0.48
Claustrum8.24 ± 0.27
Epithalamus8.13 ± 0.38
Frontal Lobe8.01 ± 0.37
Globus Pallidus7.12 ± 0.27
Hypothalamus8.16 ± 0.49
Insula8.12 ± 0.23
Limbic Lobe7.96 ± 0.36
Mesencephalon7.83 ± 0.51
Myelencephalon7.96 ± 0.49
Occipital Lobe7.89 ± 0.34
Parietal Lobe8 ± 0.39
Pontine Tegmentum7.87 ± 0.4
Striatum7.31 ± 0.45
Subthalamus8.06 ± 0.26
Temporal Lobe8.16 ± 0.34
Thalamus7.86 ± 0.39
White Matter6.1 ± 0.27
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Igsf4bCBCerebellum100
100
Igsf4bCTXCerebral cortex100
100
Igsf4bHIPHippocampal region100
100
Igsf4bHPFHippocampal formation100
100
Igsf4bHYHypothalamus100
100
Igsf4bLSXLateral septal complex100
100
Igsf4bMBMidbrain100
100
Igsf4bMYMedulla100
100
Igsf4bOLFOlfactory bulb100
100
Igsf4bPPons100
100
Igsf4bPALPallidum100
100
Igsf4bRHPRetrohippocampal region100
100
Igsf4bsAMYStriatum-like amygdalar nuclei100
100
Igsf4bSTRStriatum100
100
Igsf4bSTRdStriatum dorsal region100
100
Igsf4bSTRvStriatum ventral region100
100
Igsf4bTHThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00065478 17 180 196 DTATLNCQSSGSKPAAR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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