Annotation Detail for PTPRG
Basic Information Top
| Gene Symbol: | PTPRG ( HPTPG,PTPG,R-PTP-GAMMA,RPTPG ) |
|---|---|
| Gene Full Name: | protein tyrosine phosphatase, receptor type, G |
| Band: | 3p14.2 |
| Quick Links | Entrez ID:5793; OMIM: 176886; Uniprot ID:PTPRG_HUMAN; ENSEMBL ID: ENSG00000144724; HGNC ID: 9671 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.595541
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 10 / 62319 | 160 | |
| fetus | 13 / 564012 | 23 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 44 / 1939121 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 5 / 263845 | 18 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 85 / 3360307 | 25 | |
| ovarian tumor | 7 / 76682 | 91 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 3 / 13106 | 228 |  |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 22 / 1100989 | 19 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 15 / 215722 | 69 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 1 / 89626 | 11 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 6 / 336974 | 17 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 8 / 102051 | 78 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 11 / 280825 | 39 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 12 / 330442 | 36 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 204944_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 6.65 | |
| Adipocyte | 100.25 | |
| AdrenalCortex | 6.15 | |
| Adrenalgland | 4.65 | |
| Amygdala | 6.25 | |
| Appendix | 14.75 | |
| AtrioventricularNode | 4.6 | |
| BDCA4+_DentriticCells | 5.5 | |
| Bonemarrow | 5.35 | |
| BronchialEpithelialCells | 5.95 | |
| CD105+_Endothelial | 5.35 | |
| CD14+_Monocytes | 5.6 | |
| CD19+_BCells(neg._sel.) | 5.6 | |
| CD33+_Myeloid | 6.7 | |
| CD34+ | 6.7 | |
| CD4+_Tcells | 5.5 | |
| CD56+_NKCells | 6.15 | |
| CD71+_EarlyErythroid | 5 | |
| CD8+_Tcells | 4.9 | |
| CardiacMyocytes | 7.25 | |
| Caudatenucleus | 4.75 | |
| Cerebellum | 4.3 | |
| CerebellumPeduncles | 6.15 | |
| CiliaryGanglion | 4.35 | |
| CingulateCortex | 5.45 | |
| Colorectaladenocarcinoma | 5.25 | |
| DorsalRootGanglion | 4.35 | |
| FetalThyroid | 5.15 | |
| Fetalbrain | 5.4 | |
| Fetalliver | 4.65 | |
| Fetallung | 4.4 | |
| GlobusPallidus | 3.95 | |
| Heart | 7.45 | |
| Hypothalamus | 5.75 | |
| Kidney | 4.45 | |
| Leukemia_chronicMyelogenousK-562 | 4.7 | |
| Leukemia_promyelocytic-HL-60 | 4.7 | |
| Leukemialymphoblastic(MOLT-4) | 4.1 | |
| Liver | 7.35 | |
| Lung | 5.8 | |
| Lymphnode | 4.45 | |
| Lymphoma_burkitts(Daudi) | 6.85 | |
| Lymphoma_burkitts(Raji) | 7.65 | |
| MedullaOblongata | 4.9 | |
| OccipitalLobe | 4.7 | |
| OlfactoryBulb | 4.2 | |
| Ovary | 5.2 | |
| Pancreas | 4.35 | |
| PancreaticIslet | 5.7 | |
| ParietalLobe | 5.75 | |
| Pituitary | 6.2 | |
| Placenta | 5.7 | |
| Pons | 5.05 | |
| PrefrontalCortex | 6.65 | |
| Prostate | 6.15 | |
| Salivarygland | 4.3 | |
| SkeletalMuscle | 6.95 | |
| Skin | 4.4 | |
| SmoothMuscle | 6.05 | |
| Spinalcord | 5.65 | |
| SubthalamicNucleus | 4.9 | |
| SuperiorCervicalGanglion | 7.05 | |
| TemporalLobe | 4.85 | |
| Testis | 5.1 | |
| TestisGermCell | 16.15 | |
| TestisIntersitial | 4.45 | |
| TestisLeydigCell | 5.25 | |
| TestisSeminiferousTubule | 4.6 | |
| Thalamus | 5.4 | |
| Thymus | 4.05 | |
| Thyroid | 6.75 | |
| Tongue | 5.45 | |
| Tonsil | 5.15 | |
| Trachea | 4.45 | |
| TrigeminalGanglion | 5.8 | |
| Uterus | 4.3 | |
| UterusCorpus | 5.15 | |
| WholeBlood | 5.75 | |
| Wholebrain | 4.45 | |
| colon | 5.4 | |
| pineal_day | 6.56 | |
| pineal_night | 6.52 | |
| retina | 8.4 | |
| small_intestine | 5.1 | |
- Probe name: CUST_9135_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.53 ± 0.47 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4 ± 0.4 | |
| Basal Part of Pons | 3.48 ± 0.41 | |
| Cerebellar Cortex | 4.19 ± 0.55 | |
| Cerebellar Nuclei | 3.87 ± 0.56 | |
| Claustrum | 4.06 ± 0.72 | |
| Epithalamus | 4.31 ± 0.38 | |
| Frontal Lobe | 4.13 ± 0.53 | |
| Globus Pallidus | 3.52 ± 0.62 | |
| Hypothalamus | 4.27 ± 0.51 | |
| Insula | 4.49 ± 0.38 | |
| Limbic Lobe | 4.6 ± 0.68 | |
| Mesencephalon | 4.28 ± 0.48 | |
| Myelencephalon | 4.36 ± 0.64 | |
| Occipital Lobe | 4.66 ± 0.53 | |
| Parietal Lobe | 4.27 ± 0.55 | |
| Pontine Tegmentum | 4.29 ± 0.58 | |
| Striatum | 4.54 ± 0.46 | |
| Subthalamus | 3.87 ± 0.34 | |
| Temporal Lobe | 4.38 ± 0.48 | |
| Thalamus | 4.04 ± 0.51 | |
| White Matter | 2.53 ± 1.05 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ptprg | CB | Cerebellum | 2.74 | |
| 2.84 | | |||
| Ptprg | CTX | Cerebral cortex | 19.4 | |
| 17.46 | | |||
| Ptprg | HIP | Hippocampal region | 26.23 | |
| 45.6 | | |||
| Ptprg | HPF | Hippocampal formation | 28.99 | |
| 40.94 | | |||
| Ptprg | HY | Hypothalamus | 6.13 | |
| 5.66 | | |||
| Ptprg | LSX | Lateral septal complex | 12.87 | |
| 10.51 | | |||
| Ptprg | MB | Midbrain | 3.31 | |
| 3.05 | | |||
| Ptprg | MY | Medulla | 6.12 | |
| 6.24 | | |||
| Ptprg | OLF | Olfactory bulb | 30.81 | |
| 28.51 | | |||
| Ptprg | P | Pons | 4.32 | |
| 4.63 | | |||
| Ptprg | PAL | Pallidum | 12.04 | |
| 11.05 | | |||
| Ptprg | RHP | Retrohippocampal region | 34.49 | |
| 36.07 | | |||
| Ptprg | sAMY | Striatum-like amygdalar nuclei | 13.55 | |
| 11.54 | | |||
| Ptprg | STR | Striatum | 9 | |
| 7.74 | | |||
| Ptprg | STRd | Striatum dorsal region | 6.23 | |
| 5.81 | | |||
| Ptprg | STRv | Striatum ventral region | 15.01 | |
| 11.15 | | |||
| Ptprg | TH | Thalamus | 6.18 | |
| 8.33 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00027651 | 15 | 433 | 447 | SDFSQTMLFQANTTR | Peptide Atlas |