Annotation Detail for PTPRR
Basic Information Top
Gene Symbol: | PTPRR ( DKFZp781C1038,EC-PTP,FLJ34328,MGC131968,MGC148170,PCPTP1,PTP-SL,PTPBR7,PTPRQ ) |
---|---|
Gene Full Name: | protein tyrosine phosphatase, receptor type, R |
Band: | 12q15 |
Quick Links | Entrez ID:5801; OMIM: 602853; Uniprot ID:PTPRR_HUMAN; ENSEMBL ID: ENSG00000153233; HGNC ID: 9680 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.506076
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 0 / 70761 | 0 | |
blastocyst | 0 / 62319 | 0 | |
fetus | 6 / 564012 | 10 | |
neonate | 0 / 31097 | 0 | |
infant | 0 / 23620 | 0 | |
juvenile | 3 / 55556 | 53 | |
adult | 26 / 1939121 | 13 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 1 / 17475 | 57 | |
breast (mammary gland) tumor | 0 / 94178 | 0 | |
cervical tumor | 0 / 34366 | 0 | |
chondrosarcoma | 2 / 82823 | 24 | |
colorectal tumor | 0 / 114246 | 0 | |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 1 / 119369 | 8 | |
germ cell tumor | 11 / 263845 | 41 | |
glioma | 0 / 106883 | 0 | |
head and neck tumor | 0 / 136302 | 0 | |
kidney tumor | 0 / 68959 | 0 | |
leukemia | 0 / 95842 | 0 | |
liver tumor | 0 / 96359 | 0 | |
lung tumor | 0 / 103127 | 0 | |
lymphoma | 0 / 71755 | 0 | |
non-neoplasia | 0 / 97250 | 0 | |
normal | 65 / 3360307 | 19 | |
ovarian tumor | 0 / 76682 | 0 | |
pancreatic tumor | 1 / 104616 | 9 | |
primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
prostate cancer | 0 / 102680 | 0 | |
retinoblastoma | 0 / 46356 | 0 | |
skin tumor | 0 / 124949 | 0 | |
soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
uterine tumor | 0 / 90257 | 0 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 0 / 13106 | 0 | |
adrenal gland | 0 / 33197 | 0 | |
ascites | 0 / 40015 | 0 | |
bladder | 3 / 29757 | 100 | |
blood | 0 / 123478 | 0 | |
bone | 2 / 71655 | 27 | |
bone marrow | 0 / 48801 | 0 | |
brain | 49 / 1100989 | 44 | |
cervix | 8 / 48171 | 166 | |
connective tissue | 2 / 149255 | 13 | |
ear | 0 / 16212 | 0 | |
embryonic tissue | 0 / 215722 | 0 | |
esophagus | 0 / 20209 | 0 | |
eye | 3 / 211054 | 14 | |
heart | 0 / 89626 | 0 | |
intestine | 1 / 234472 | 4 | |
kidney | 1 / 211777 | 4 | |
larynx | 0 / 24145 | 0 | |
liver | 0 / 207743 | 0 | |
lung | 0 / 336974 | 0 | |
lymph | 0 / 44270 | 0 | |
lymph node | 0 / 91610 | 0 | |
mammary gland | 0 / 153271 | 0 | |
mouth | 0 / 67052 | 0 | |
muscle | 1 / 107715 | 9 | |
nerve | 3 / 15768 | 190 | |
ovary | 0 / 102051 | 0 | |
pancreas | 1 / 214812 | 4 | |
parathyroid | 0 / 20539 | 0 | |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 0 / 16585 | 0 | |
placenta | 1 / 280825 | 3 | |
prostate | 0 / 189345 | 0 | |
salivary gland | 0 / 20155 | 0 | |
skin | 0 / 210574 | 0 | |
spleen | 0 / 53952 | 0 | |
stomach | 1 / 96619 | 10 | |
testis | 0 / 330442 | 0 | |
thymus | 0 / 81131 | 0 | |
thyroid | 0 / 47473 | 0 | |
tonsil | 0 / 16999 | 0 | |
trachea | 0 / 52413 | 0 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 1 / 232878 | 4 | |
vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 210675_s_at
Cell line | Expression level | Expression bar |
---|---|---|
721_B_lymphoblasts | 7.05 | |
Adipocyte | 6.1 | |
AdrenalCortex | 7.25 | |
Adrenalgland | 5.6 | |
Amygdala | 13.4 | |
Appendix | 7.45 | |
AtrioventricularNode | 6.05 | |
BDCA4+_DentriticCells | 6.2 | |
Bonemarrow | 6.7 | |
BronchialEpithelialCells | 5.9 | |
CD105+_Endothelial | 6.1 | |
CD14+_Monocytes | 6.6 | |
CD19+_BCells(neg._sel.) | 6.35 | |
CD33+_Myeloid | 7.6 | |
CD34+ | 7.4 | |
CD4+_Tcells | 6.4 | |
CD56+_NKCells | 6.9 | |
CD71+_EarlyErythroid | 6 | |
CD8+_Tcells | 5.55 | |
CardiacMyocytes | 9.65 | |
Caudatenucleus | 6.3 | |
Cerebellum | 8.8 | |
CerebellumPeduncles | 8.25 | |
CiliaryGanglion | 5.2 | |
CingulateCortex | 7.8 | |
Colorectaladenocarcinoma | 6.2 | |
DorsalRootGanglion | 5.45 | |
FetalThyroid | 6.1 | |
Fetalbrain | 6.7 | |
Fetalliver | 5.55 | |
Fetallung | 4.8 | |
GlobusPallidus | 6.65 | |
Heart | 9.1 | |
Hypothalamus | 6.5 | |
Kidney | 5.45 | |
Leukemia_chronicMyelogenousK-562 | 5.65 | |
Leukemia_promyelocytic-HL-60 | 5.45 | |
Leukemialymphoblastic(MOLT-4) | 4.95 | |
Liver | 9 | |
Lung | 6.7 | |
Lymphnode | 5.15 | |
Lymphoma_burkitts(Daudi) | 8.15 | |
Lymphoma_burkitts(Raji) | 10.2 | |
MedullaOblongata | 5.7 | |
OccipitalLobe | 6.85 | |
OlfactoryBulb | 4.95 | |
Ovary | 4.45 | |
Pancreas | 5.25 | |
PancreaticIslet | 6.9 | |
ParietalLobe | 7.25 | |
Pituitary | 7.35 | |
Placenta | 6.25 | |
Pons | 6.35 | |
PrefrontalCortex | 8.35 | |
Prostate | 7.1 | |
Salivarygland | 5.2 | |
SkeletalMuscle | 8.4 | |
Skin | 6.55 | |
SmoothMuscle | 7 | |
Spinalcord | 6.6 | |
SubthalamicNucleus | 8.85 | |
SuperiorCervicalGanglion | 15.2 | |
TemporalLobe | 5.9 | |
Testis | 5.35 | |
TestisGermCell | 5.05 | |
TestisIntersitial | 5.35 | |
TestisLeydigCell | 6.4 | |
TestisSeminiferousTubule | 5.3 | |
Thalamus | 6.55 | |
Thymus | 4.7 | |
Thyroid | 7.5 | |
Tongue | 6.6 | |
Tonsil | 6.15 | |
Trachea | 5.15 | |
TrigeminalGanglion | 9 | |
Uterus | 5.05 | |
UterusCorpus | 6.2 | |
WholeBlood | 6.75 | |
Wholebrain | 8.7 | |
colon | 6.2 | |
pineal_day | 84.62 | |
pineal_night | 65.88 | |
retina | 7.5 | |
small_intestine | 5.95 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: CUST_7792_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 6.15 ± 0.58 | |
Basal Forebrain | 5.55 ± 0.38 | |
Basal Part of Pons | 4.96 ± 0.65 | |
Cerebellar Cortex | 6.28 ± 0.23 | |
Cerebellar Nuclei | 4.61 ± 0.42 | |
Claustrum | 5.33 ± 0.92 | |
Epithalamus | 4.96 ± 0.89 | |
Frontal Lobe | 5.66 ± 0.62 | |
Globus Pallidus | 4.17 ± 0.53 | |
Hypothalamus | 5.58 ± 0.39 | |
Insula | 6 ± 0.37 | |
Limbic Lobe | 5.63 ± 0.68 | |
Mesencephalon | 5.53 ± 0.66 | |
Myelencephalon | 5.59 ± 0.71 | |
Occipital Lobe | 5.07 ± 0.56 | |
Parietal Lobe | 5.45 ± 0.49 | |
Pontine Tegmentum | 5.72 ± 0.68 | |
Striatum | 4.95 ± 0.56 | |
Subthalamus | 5.08 ± 0.61 | |
Temporal Lobe | 5.96 ± 0.44 | |
Thalamus | 5.78 ± 0.5 | |
White Matter | 3.89 ± 0.2 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Ptprr | CB | Cerebellum | 22.05 | |
81.34 | ||||
Ptprr | CTX | Cerebral cortex | 3.82 | |
2.87 | ||||
Ptprr | HIP | Hippocampal region | 5.4 | |
6.24 | ||||
Ptprr | HPF | Hippocampal formation | 6.26 | |
6.15 | ||||
Ptprr | HY | Hypothalamus | 0.92 | |
0.77 | ||||
Ptprr | LSX | Lateral septal complex | 6.63 | |
4.25 | ||||
Ptprr | MB | Midbrain | 0.74 | |
0.65 | ||||
Ptprr | MY | Medulla | 4.95 | |
5.86 | ||||
Ptprr | OLF | Olfactory bulb | 6.46 | |
5.89 | ||||
Ptprr | P | Pons | 1.69 | |
2 | ||||
Ptprr | PAL | Pallidum | 2.24 | |
2.19 | ||||
Ptprr | RHP | Retrohippocampal region | 7.41 | |
5.77 | ||||
Ptprr | sAMY | Striatum-like amygdalar nuclei | 6.5 | |
5.47 | ||||
Ptprr | STR | Striatum | 2.21 | |
1.78 | ||||
Ptprr | STRd | Striatum dorsal region | 1.19 | |
1.07 | ||||
Ptprr | STRv | Striatum ventral region | 2.31 | |
1.68 | ||||
Ptprr | TH | Thalamus | 4.21 | |
5.25 |