Annotation Detail for PVALB
Basic Information Top
| Gene Symbol: | PVALB ( D22S749,MGC116759 ) |
|---|---|
| Gene Full Name: | parvalbumin |
| Band: | 22q12.3 |
| Quick Links | Entrez ID:5816; OMIM: 168890; Uniprot ID:PRVA_HUMAN; ENSEMBL ID: ENSG00000100362; HGNC ID: 9704 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.295449
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 6 / 564012 | 10 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 70 / 1939121 | 36 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 8 / 68959 | 116 |  |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 40 / 3360307 | 11 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 18 / 1100989 | 16 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 10 / 211054 | 47 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 28 / 211777 | 132 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 29 / 20539 | 1411 |  |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 205336_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 6.2 | |
| Adipocyte | 5.3 | |
| AdrenalCortex | 5.85 | |
| Adrenalgland | 4.6 | |
| Amygdala | 5.65 | |
| Appendix | 5.55 | |
| AtrioventricularNode | 5.15 | |
| BDCA4+_DentriticCells | 5.4 | |
| Bonemarrow | 5.6 | |
| BronchialEpithelialCells | 5.2 | |
| CD105+_Endothelial | 5.3 | |
| CD14+_Monocytes | 5.6 | |
| CD19+_BCells(neg._sel.) | 5.45 | |
| CD33+_Myeloid | 6.55 | |
| CD34+ | 6.35 | |
| CD4+_Tcells | 5.55 | |
| CD56+_NKCells | 6.05 | |
| CD71+_EarlyErythroid | 5.05 | |
| CD8+_Tcells | 4.95 | |
| CardiacMyocytes | 7.6 | |
| Caudatenucleus | 4.85 | |
| Cerebellum | 689.15 |  |
| CerebellumPeduncles | 503.15 | |
| CiliaryGanglion | 4.55 | |
| CingulateCortex | 82.3 | |
| Colorectaladenocarcinoma | 5.4 | |
| DorsalRootGanglion | 5.95 | |
| FetalThyroid | 5.2 | |
| Fetalbrain | 5.25 | |
| Fetalliver | 4.75 | |
| Fetallung | 4.3 | |
| GlobusPallidus | 7.8 | |
| Heart | 7.05 | |
| Hypothalamus | 58.7 | |
| Kidney | 19.9 | |
| Leukemia_chronicMyelogenousK-562 | 4.8 | |
| Leukemia_promyelocytic-HL-60 | 4.75 | |
| Leukemialymphoblastic(MOLT-4) | 4.25 | |
| Liver | 7.5 | |
| Lung | 5.85 | |
| Lymphnode | 4.5 | |
| Lymphoma_burkitts(Daudi) | 6.85 | |
| Lymphoma_burkitts(Raji) | 7.65 | |
| MedullaOblongata | 19.25 | |
| OccipitalLobe | 5.1 | |
| OlfactoryBulb | 4.2 | |
| Ovary | 3.65 | |
| Pancreas | 4.3 | |
| PancreaticIslet | 5.75 | |
| ParietalLobe | 13.85 | |
| Pituitary | 6.3 | |
| Placenta | 5.5 | |
| Pons | 10.65 | |
| PrefrontalCortex | 10.5 | |
| Prostate | 6.15 | |
| Salivarygland | 4.3 | |
| SkeletalMuscle | 6.6 | |
| Skin | 4.15 | |
| SmoothMuscle | 6.05 | |
| Spinalcord | 12.35 | |
| SubthalamicNucleus | 15.15 | |
| SuperiorCervicalGanglion | 6.65 | |
| TemporalLobe | 17.8 | |
| Testis | 4.65 | |
| TestisGermCell | 4.45 | |
| TestisIntersitial | 4.5 | |
| TestisLeydigCell | 5.4 | |
| TestisSeminiferousTubule | 4.55 | |
| Thalamus | 635.65 | |
| Thymus | 4.15 | |
| Thyroid | 6.65 | |
| Tongue | 5.4 | |
| Tonsil | 5.2 | |
| Trachea | 4.45 | |
| TrigeminalGanglion | 5.85 | |
| Uterus | 4.3 | |
| UterusCorpus | 5.05 | |
| WholeBlood | 5.9 | |
| Wholebrain | 81.45 | |
| colon | 5.35 | |
| pineal_day | 6.48 | |
| pineal_night | 6.4 | |
| retina | 51.15 | |
| small_intestine | 5.15 | |
- Probe name: CUST_11451_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.61 ± 1.36 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.91 ± 0.78 | |
| Basal Part of Pons | 7.65 ± 0.7 | |
| Cerebellar Cortex | 9.95 ± 0.56 | |
| Cerebellar Nuclei | 11.67 ± 0.59 | |
| Claustrum | 6.32 ± 0.99 | |
| Epithalamus | 6.12 ± 1.95 | |
| Frontal Lobe | 8.48 ± 1.54 | |
| Globus Pallidus | 8.78 ± 1.19 | |
| Hypothalamus | 5.92 ± 1.29 | |
| Insula | 7.34 ± 1.07 | |
| Limbic Lobe | 6.77 ± 1.41 | |
| Mesencephalon | 7.86 ± 2.24 | |
| Myelencephalon | 8 ± 2.04 | |
| Occipital Lobe | 9.05 ± 0.96 | |
| Parietal Lobe | 9.19 ± 1.36 | |
| Pontine Tegmentum | 9.14 ± 1.58 | |
| Striatum | 4.42 ± 1.17 | |
| Subthalamus | 10.3 ± 0.84 | |
| Temporal Lobe | 7.89 ± 1.49 | |
| Thalamus | 10.49 ± 1.24 | |
| White Matter | 4.46 ± 1.29 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Pvalb | CB | Cerebellum | 100 | |
| 100 | | |||
| Pvalb | CTX | Cerebral cortex | 41.37 | |
| 65.26 | | |||
| Pvalb | HIP | Hippocampal region | 15.72 | |
| 35.55 | | |||
| Pvalb | HPF | Hippocampal formation | 22.68 | |
| 40.51 | | |||
| Pvalb | HY | Hypothalamus | 21.7 | |
| 26.33 | | |||
| Pvalb | LSX | Lateral septal complex | 8.48 | |
| 9.95 | | |||
| Pvalb | MB | Midbrain | 58.08 | |
| 89.04 | | |||
| Pvalb | MY | Medulla | 82 | |
| 99.97 | | |||
| Pvalb | OLF | Olfactory bulb | 25.51 | |
| 22.24 | | |||
| Pvalb | P | Pons | 61.62 | |
| 98.92 | | |||
| Pvalb | PAL | Pallidum | 34.3 | |
| 57.89 | | |||
| Pvalb | RHP | Retrohippocampal region | 34.95 | |
| 48.85 | | |||
| Pvalb | sAMY | Striatum-like amygdalar nuclei | 12.83 | |
| 12.24 | | |||
| Pvalb | STR | Striatum | 12.59 | |
| 14.24 | | |||
| Pvalb | STRd | Striatum dorsal region | 11.98 | |
| 14.27 | | |||
| Pvalb | STRv | Striatum ventral region | 15.94 | |
| 16.48 | | |||
| Pvalb | TH | Thalamus | 36.85 | |
| 64.53 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00411783 | 8 | 30 | 37 | FFQMVGLK | Peptide Atlas |