Annotation Detail for CXCL16
Basic Information Top
| Gene Symbol: | CXCL16 ( CXCLG16,SR-PSOX,SRPSOX ) |
|---|---|
| Gene Full Name: | chemokine (C-X-C motif) ligand 16 |
| Band: | 17p13.2 |
| Quick Links | Entrez ID:58191; OMIM: 605398; Uniprot ID:CXL16_HUMAN; ENSEMBL ID: ENSG00000161921; HGNC ID: 16642 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.513885
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 22 / 564012 | 39 | |
| neonate | 5 / 31097 | 160 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 99 / 1939121 | 51 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 6 / 94178 | 63 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 11 / 114246 | 96 | |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 17 / 119369 | 142 | |
| germ cell tumor | 1 / 263845 | 3 |  |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 39 / 97250 | 401 |  |
| normal | 203 / 3360307 | 60 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 3 / 29757 | 100 | |
| blood | 12 / 123478 | 97 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 68 / 1100989 | 61 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 33 / 149255 | 221 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 10 / 211054 | 47 | |
| heart | 2 / 89626 | 22 | |
| intestine | 23 / 234472 | 98 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 1 / 24145 | 41 | |
| liver | 5 / 207743 | 24 | |
| lung | 23 / 336974 | 68 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 13 / 153271 | 84 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 13 / 53952 | 240 | |
| stomach | 15 / 96619 | 155 | |
| testis | 17 / 330442 | 51 | |
| thymus | 8 / 81131 | 98 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 12 / 232878 | 51 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P38505
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.3 ± 0.56 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.21 ± 0.33 | |
| Basal Part of Pons | 6.11 ± 0.45 | |
| Cerebellar Cortex | 5.68 ± 0.51 | |
| Cerebellar Nuclei | 6.38 ± 0.53 | |
| Claustrum | 6.26 ± 0.59 | |
| Epithalamus | 6.17 ± 0.42 | |
| Frontal Lobe | 5.96 ± 0.55 | |
| Globus Pallidus | 6.75 ± 0.35 | |
| Hypothalamus | 5.8 ± 0.62 | |
| Insula | 6.05 ± 0.42 | |
| Limbic Lobe | 6.14 ± 0.61 | |
| Mesencephalon | 6.18 ± 0.52 | |
| Myelencephalon | 6.08 ± 0.55 | |
| Occipital Lobe | 5.92 ± 0.59 | |
| Parietal Lobe | 5.91 ± 0.57 | |
| Pontine Tegmentum | 5.76 ± 0.5 | |
| Striatum | 6.26 ± 0.51 | |
| Subthalamus | 5.41 ± 0.7 | |
| Temporal Lobe | 5.91 ± 0.57 | |
| Thalamus | 6.05 ± 0.5 | |
| White Matter | 6.75 ± 0.23 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cxcl16 | CB | Cerebellum | 16.54 | |
| 18.73 | | |||
| Cxcl16 | CTX | Cerebral cortex | 25.92 | |
| 18.71 | | |||
| Cxcl16 | HIP | Hippocampal region | 17.38 | |
| 16.11 | | |||
| Cxcl16 | HPF | Hippocampal formation | 22.72 | |
| 19.08 | | |||
| Cxcl16 | HY | Hypothalamus | 12.6 | |
| 10.52 | | |||
| Cxcl16 | LSX | Lateral septal complex | 4.32 | |
| 3.11 | | |||
| Cxcl16 | MB | Midbrain | 9.61 | |
| 9.8 | | |||
| Cxcl16 | MY | Medulla | 26.6 | |
| 30.04 | | |||
| Cxcl16 | OLF | Olfactory bulb | 43.99 | |
| 33.52 | | |||
| Cxcl16 | P | Pons | 19.83 | |
| 22.47 | | |||
| Cxcl16 | PAL | Pallidum | 14.64 | |
| 14.27 | | |||
| Cxcl16 | RHP | Retrohippocampal region | 36.65 | |
| 26.86 | | |||
| Cxcl16 | sAMY | Striatum-like amygdalar nuclei | 28.98 | |
| 20.91 | | |||
| Cxcl16 | STR | Striatum | 16.44 | |
| 11.86 | | |||
| Cxcl16 | STRd | Striatum dorsal region | 13.92 | |
| 9.8 | | |||
| Cxcl16 | STRv | Striatum ventral region | 29.3 | |
| 20.9 | | |||
| Cxcl16 | TH | Thalamus | 10.31 | |
| 8.05 | |