AutismKB 2.0

Annotation Detail for PEX5


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Basic Information Top
Gene Symbol:PEX5 ( FLJ50634,FLJ50721,FLJ51948,PTS1-BP,PTS1R,PXR1 )
Gene Full Name: peroxisomal biogenesis factor 5
Band: 12p13.31
Quick LinksEntrez ID:5830; OMIM: 600414; Uniprot ID:PEX5_HUMAN; ENSEMBL ID: ENSG00000139197; HGNC ID: 9719
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst2 / 6231932
fetus26 / 56401246
neonate0 / 310970 
infant5 / 23620211
juvenile5 / 5555689
adult80 / 193912141
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor5 / 9417853
cervical tumor3 / 3436687
chondrosarcoma6 / 8282372
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor20 / 26384575
glioma6 / 10688356
head and neck tumor10 / 13630273
kidney tumor2 / 6895929
leukemia1 / 9584210
liver tumor4 / 9635941
lung tumor0 / 1031270 
lymphoma5 / 7175569
non-neoplasia1 / 9725010
normal164 / 336030748
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer5 / 10268048
retinoblastoma3 / 4635664
skin tumor4 / 12494932
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites2 / 4001549
bladder2 / 2975767
blood2 / 12347816
bone3 / 7165541
bone marrow0 / 488010 
brain79 / 110098971
cervix3 / 4817162
connective tissue7 / 14925546
ear0 / 162120 
embryonic tissue6 / 21572227
esophagus0 / 202090 
eye5 / 21105423
heart3 / 8962633
intestine7 / 23447229
kidney5 / 21177723
larynx0 / 241450 
liver4 / 20774319
lung13 / 33697438
lymph0 / 442700 
lymph node4 / 9161043
mammary gland6 / 15327139
mouth8 / 67052119
muscle3 / 10771527
nerve1 / 1576863
ovary1 / 1020519
pancreas4 / 21481218
parathyroid2 / 2053997
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta4 / 28082514
prostate7 / 18934536
salivary gland1 / 2015549
skin5 / 21057423
spleen0 / 539520 
stomach3 / 9661931
testis36 / 330442108
thymus15 / 81131184
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus9 / 23287838
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 215481_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.95
Adipocyte10.1
AdrenalCortex8.95
Adrenalgland6.65
Amygdala7.7
Appendix8.25
AtrioventricularNode8.55
BDCA4+_DentriticCells8.05
Bonemarrow8.05
BronchialEpithelialCells7.35
CD105+_Endothelial7.2
CD14+_Monocytes7.85
CD19+_BCells(neg._sel.)7.8
CD33+_Myeloid8.4
CD34+9.25
CD4+_Tcells7.6
CD56+_NKCells8.85
CD71+_EarlyErythroid8.3
CD8+_Tcells6.7
CardiacMyocytes11.2
Caudatenucleus6.85
Cerebellum6.3
CerebellumPeduncles8.85
CiliaryGanglion6.2
CingulateCortex9.35
Colorectaladenocarcinoma12.65
DorsalRootGanglion6.2
FetalThyroid7.45
Fetalbrain7.4
Fetalliver6.7
Fetallung5.6
GlobusPallidus6.1
Heart11.2
Hypothalamus7.75
Kidney6.6
Leukemia_chronicMyelogenousK-5626.9
Leukemia_promyelocytic-HL-606.8
Leukemialymphoblastic(MOLT-4)6
Liver14.9
Lung9.7
Lymphnode6.35
Lymphoma_burkitts(Daudi)10.1
Lymphoma_burkitts(Raji)11.65
MedullaOblongata6.9
OccipitalLobe6.8
OlfactoryBulb5.85
Ovary5.2
Pancreas6.3
PancreaticIslet15.15
ParietalLobe8.3
Pituitary12.5
Placenta7.75
Pons7.4
PrefrontalCortex8.95
Prostate8.35
Salivarygland6.4
SkeletalMuscle10.9
Skin6.2
SmoothMuscle8.55
Spinalcord9.3
SubthalamicNucleus11.55
SuperiorCervicalGanglion9.55
TemporalLobe7.65
Testis8.9
TestisGermCell6.35
TestisIntersitial12.8
TestisLeydigCell14.2
TestisSeminiferousTubule10.1
Thalamus7.95
Thymus5.95
Thyroid9.3
Tongue8.2
Tonsil7.5
Trachea6.45
TrigeminalGanglion8.65
Uterus5.75
UterusCorpus9.6
WholeBlood8.1
Wholebrain7.95
colon7.55
pineal_day9.66
pineal_night9.9
retina9.175
small_intestine7.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P372932
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.56 ± 0.6
Basal Forebrain4.54 ± 0.53
Basal Part of Pons4.48 ± 0.42
Cerebellar Cortex4.32 ± 0.37
Cerebellar Nuclei4.36 ± 0.32
Claustrum4.63 ± 0.62
Epithalamus4.25 ± 0.48
Frontal Lobe4.5 ± 0.52
Globus Pallidus4.24 ± 0.45
Hypothalamus3.95 ± 0.38
Insula4.22 ± 0.73
Limbic Lobe4.49 ± 0.52
Mesencephalon4.5 ± 0.53
Myelencephalon4.48 ± 0.52
Occipital Lobe4.52 ± 0.42
Parietal Lobe4.53 ± 0.44
Pontine Tegmentum4.49 ± 0.53
Striatum4.74 ± 0.47
Subthalamus4.37 ± 0.27
Temporal Lobe4.48 ± 0.41
Thalamus4.28 ± 0.48
White Matter4.83 ± 0.79
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Pex5CBCerebellum17.88
12.68
Pex5CTXCerebral cortex69.21
33.93
Pex5HIPHippocampal region33.47
26.34
Pex5HPFHippocampal formation46.95
32.4
Pex5HYHypothalamus39.93
18.86
Pex5LSXLateral septal complex26.37
8.7
Pex5MBMidbrain27.73
13.74
Pex5MYMedulla41.12
25.53
Pex5OLFOlfactory bulb82.09
51.03
Pex5PPons40.2
25.5
Pex5PALPallidum35.52
20.07
Pex5RHPRetrohippocampal region76.58
44.75
Pex5sAMYStriatum-like amygdalar nuclei64.52
35.79
Pex5STRStriatum26.28
13
Pex5STRdStriatum dorsal region15.94
7.63
Pex5STRvStriatum ventral region38.82
18.72
Pex5THThalamus35.22
17.91
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00043270 21 184 204 WYDEYHPEEDLQHTASDFVAK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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