AutismKB 2.0

Annotation Detail for PCTP


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Basic Information Top
Gene Symbol:PCTP ( PC-TP,STARD2 )
Gene Full Name: phosphatidylcholine transfer protein
Band: 17q22
Quick LinksEntrez ID:58488; OMIM: 606055; Uniprot ID:PPCT_HUMAN; ENSEMBL ID: ENSG00000141179; HGNC ID: 8752
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst3 / 6231948
fetus23 / 56401240
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult73 / 193912137
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor9 / 9417895
cervical tumor1 / 3436629
chondrosarcoma3 / 8282336
colorectal tumor0 / 1142460 
esophageal tumor1 / 1729057
gastrointestinal tumor1 / 1193698
germ cell tumor10 / 26384537
glioma8 / 10688374
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia5 / 9584252
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma1 / 7175513
non-neoplasia0 / 972500 
normal109 / 336030732
ovarian tumor3 / 7668239
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS8 / 12568063
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor4 / 12494932
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder3 / 29757100
blood2 / 12347816
bone2 / 7165527
bone marrow2 / 4880140
brain15 / 110098913
cervix3 / 4817162
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus1 / 2020949
eye0 / 2110540 
heart4 / 8962644
intestine11 / 23447246
kidney19 / 21177789
larynx0 / 241450 
liver5 / 20774324
lung3 / 3369748
lymph0 / 442700 
lymph node4 / 9161043
mammary gland10 / 15327165
mouth0 / 670520 
muscle5 / 10771546
nerve0 / 157680 
ovary1 / 1020519
pancreas1 / 2148124
parathyroid3 / 20539146
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta17 / 28082560
prostate8 / 18934542
salivary gland0 / 201550 
skin4 / 21057418
spleen0 / 539520 
stomach3 / 9661931
testis11 / 33044233
thymus4 / 8113149
thyroid0 / 474730 
tonsil1 / 1699958
trachea1 / 5241319
umbilical cord0 / 136800 
uterus7 / 23287830
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218676_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.1
Adipocyte6.95
AdrenalCortex8
Adrenalgland6.2
Amygdala7.25
Appendix8.4
AtrioventricularNode6.15
BDCA4+_DentriticCells8.35
Bonemarrow23.1
BronchialEpithelialCells8.15
CD105+_Endothelial10.9
CD14+_Monocytes81.4
CD19+_BCells(neg._sel.)8
CD33+_Myeloid72.25
CD34+34.6
CD4+_Tcells7
CD56+_NKCells25.2
CD71+_EarlyErythroid101.4
CD8+_Tcells6.4
CardiacMyocytes9.9
Caudatenucleus6.6
Cerebellum5.9
CerebellumPeduncles7.95
CiliaryGanglion5.45
CingulateCortex7.4
Colorectaladenocarcinoma8.8
DorsalRootGanglion6
FetalThyroid7.2
Fetalbrain6.9
Fetalliver13.05
Fetallung7.75
GlobusPallidus5.4
Heart9.85
Hypothalamus7.3
Kidney10.65
Leukemia_chronicMyelogenousK-56279.45
Leukemia_promyelocytic-HL-606.3
Leukemialymphoblastic(MOLT-4)7.4
Liver49.55
Lung27.05
Lymphnode6.5
Lymphoma_burkitts(Daudi)8.85
Lymphoma_burkitts(Raji)10.7
MedullaOblongata6.4
OccipitalLobe6.25
OlfactoryBulb8.1
Ovary4.95
Pancreas6.1
PancreaticIslet7.55
ParietalLobe7.35
Pituitary8.5
Placenta97.4
Pons6.95
PrefrontalCortex7.65
Prostate9.6
Salivarygland5.9
SkeletalMuscle9.35
Skin5.75
SmoothMuscle8.2
Spinalcord7.6
SubthalamicNucleus6.6
SuperiorCervicalGanglion10.35
TemporalLobe6.7
Testis9.4
TestisGermCell6.65
TestisIntersitial6.75
TestisLeydigCell8.8
TestisSeminiferousTubule6.3
Thalamus7.5
Thymus5.75
Thyroid8.75
Tongue7.2
Tonsil6.7
Trachea5.8
TrigeminalGanglion7.65
Uterus5.6
UterusCorpus7.2
WholeBlood119.05
Wholebrain5.65
colon16.5
pineal_day8.44
pineal_night8.04
retina8.875
small_intestine30.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P4041
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.79 ± 0.42
Basal Forebrain6.08 ± 0.23
Basal Part of Pons5.86 ± 0.31
Cerebellar Cortex5.69 ± 0.22
Cerebellar Nuclei6.18 ± 0.28
Claustrum5.1 ± 0.58
Epithalamus5.74 ± 0.41
Frontal Lobe5.9 ± 0.39
Globus Pallidus6.75 ± 0.42
Hypothalamus6.26 ± 0.42
Insula5.95 ± 0.32
Limbic Lobe5.79 ± 0.35
Mesencephalon6.01 ± 0.47
Myelencephalon5.95 ± 0.44
Occipital Lobe6.04 ± 0.46
Parietal Lobe6.01 ± 0.39
Pontine Tegmentum6.01 ± 0.55
Striatum6.25 ± 0.29
Subthalamus6.12 ± 0.24
Temporal Lobe5.81 ± 0.38
Thalamus6.06 ± 0.48
White Matter4.86 ± 0.29
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
PctpPPons5.14
4.71
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp01430388 23 56 78 VFGVLEDCSPTLLADIYMDSDYR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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