Annotation Detail for SCAF1
Basic Information Top
| Gene Symbol: | SCAF1 ( FLJ00034,SRA1 ) |
|---|---|
| Gene Full Name: | SR-related CTD-associated factor 1 |
| Band: | 19q13.3-q13.4 |
| Quick Links | Entrez ID:58506; OMIM: NA; Uniprot ID:SFR19_HUMAN; ENSEMBL ID: ENSG00000126461; HGNC ID: 30403 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.103521
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 12 / 70761 | 169 |  |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 8 / 564012 | 14 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 49 / 1939121 | 25 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 14 / 106883 | 130 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 10 / 103127 | 96 | |
| lymphoma | 6 / 71755 | 83 | |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 69 / 3360307 | 20 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 12 / 102680 | 116 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 12 / 124949 | 96 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 1 / 123478 | 8 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 28 / 1100989 | 25 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 17 / 215722 | 78 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 18 / 211054 | 85 | |
| heart | 0 / 89626 | 0 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 14 / 336974 | 41 | |
| lymph | 6 / 44270 | 135 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 13 / 189345 | 68 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 14 / 210574 | 66 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P117672
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.1 ± 0.5 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.51 ± 0.26 | |
| Basal Part of Pons | 6.84 ± 0.35 | |
| Cerebellar Cortex | 6.39 ± 0.31 | |
| Cerebellar Nuclei | 6.6 ± 0.36 | |
| Claustrum | 7.15 ± 0.68 | |
| Epithalamus | 5.92 ± 0.41 | |
| Frontal Lobe | 6.57 ± 0.41 | |
| Globus Pallidus | 6.39 ± 0.29 | |
| Hypothalamus | 6.16 ± 0.51 | |
| Insula | 6.52 ± 0.49 | |
| Limbic Lobe | 6.96 ± 0.42 | |
| Mesencephalon | 6.62 ± 0.45 | |
| Myelencephalon | 6.71 ± 0.49 | |
| Occipital Lobe | 7 ± 0.43 | |
| Parietal Lobe | 6.67 ± 0.39 | |
| Pontine Tegmentum | 6.59 ± 0.37 | |
| Striatum | 6.89 ± 0.42 | |
| Subthalamus | 6.49 ± 0.04 | |
| Temporal Lobe | 6.69 ± 0.37 | |
| Thalamus | 6.73 ± 0.33 | |
| White Matter | 6.19 ± 0.53 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| AI480556 | CB | Cerebellum | 41.43 | |
| 59.4 | | |||
| AI480556 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| AI480556 | HIP | Hippocampal region | 74.77 | |
| 100 | | |||
| AI480556 | HPF | Hippocampal formation | 89.19 | |
| 100 | | |||
| AI480556 | HY | Hypothalamus | 81.51 | |
| 75.71 | | |||
| AI480556 | LSX | Lateral septal complex | 82.38 | |
| 69.68 | | |||
| AI480556 | MB | Midbrain | 68.77 | |
| 73.96 | | |||
| AI480556 | MY | Medulla | 65.28 | |
| 88.32 | | |||
| AI480556 | OLF | Olfactory bulb | 95.41 | |
| 98.96 | | |||
| AI480556 | P | Pons | 61.55 | |
| 80.92 | | |||
| AI480556 | PAL | Pallidum | 76.2 | |
| 83.12 | | |||
| AI480556 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| AI480556 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 99.63 | | |||
| AI480556 | STR | Striatum | 71.97 | |
| 60.26 | | |||
| AI480556 | STRd | Striatum dorsal region | 69.18 | |
| 58.27 | | |||
| AI480556 | STRv | Striatum ventral region | 66.18 | |
| 49.9 | | |||
| AI480556 | TH | Thalamus | 90.92 | |
| 93.95 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00063834 | 17 | 662 | 678 | APAPAPPPSGSTSCGDR | Peptide Atlas |
| SFR19_HUMAN_256 | 23 | 256 | 278 | FDIYDPFHPTDEAYSPPPAPEQK | PRIDE |