AutismKB 2.0

Annotation Detail for RAB2A


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Basic Information Top
Gene Symbol:RAB2A ( RAB2 )
Gene Full Name: RAB2A, member RAS oncogene family
Band: 8q12.1-q12.2
Quick LinksEntrez ID:5862; OMIM: 179509; Uniprot ID:RAB2A_HUMAN; ENSEMBL ID: ENSG00000104388; HGNC ID: 9763
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body13 / 70761183
blastocyst4 / 6231964
fetus148 / 564012262
neonate7 / 31097225
infant0 / 236200 
juvenile14 / 55556251
adult288 / 1939121148
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor8 / 9417884
cervical tumor3 / 3436687
chondrosarcoma17 / 82823205
colorectal tumor12 / 114246105
esophageal tumor4 / 17290231
gastrointestinal tumor23 / 119369192
germ cell tumor53 / 263845200
glioma17 / 106883159
head and neck tumor13 / 13630295
kidney tumor12 / 68959174
leukemia4 / 9584241
liver tumor12 / 96359124
lung tumor5 / 10312748
lymphoma3 / 7175541
non-neoplasia27 / 97250277
normal734 / 3360307218
ovarian tumor9 / 76682117
pancreatic tumor21 / 104616200
primitive neuroectodermal tumor of the CNS14 / 125680111
prostate cancer10 / 10268097
retinoblastoma0 / 463560 
skin tumor14 / 124949112
soft tissue/muscle tissue tumor16 / 125191127
uterine tumor11 / 90257121
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland4 / 33197120
ascites10 / 40015249
bladder2 / 2975767
blood8 / 12347864
bone7 / 7165597
bone marrow2 / 4880140
brain310 / 1100989281
cervix4 / 4817183
connective tissue40 / 149255267
ear2 / 16212123
embryonic tissue28 / 215722129
esophagus5 / 20209247
eye21 / 21105499
heart27 / 89626301
intestine35 / 234472149
kidney41 / 211777193
larynx0 / 241450 
liver24 / 207743115
lung87 / 336974258
lymph2 / 4427045
lymph node19 / 91610207
mammary gland18 / 153271117
mouth7 / 67052104
muscle11 / 107715102
nerve1 / 1576863
ovary10 / 10205197
pancreas41 / 214812190
parathyroid11 / 20539535
pharynx3 / 4132872
pituitary gland6 / 16585361
placenta60 / 280825213
prostate42 / 189345221
salivary gland0 / 201550 
skin57 / 210574270
spleen4 / 5395274
stomach20 / 96619206
testis60 / 330442181
thymus7 / 8113186
thyroid10 / 47473210
tonsil3 / 16999176
trachea11 / 52413209
umbilical cord3 / 13680219
uterus47 / 232878201
vascular6 / 51780115
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 208730_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts380
Adipocyte150.6
AdrenalCortex250.35
Adrenalgland166.55
Amygdala382.2
Appendix206.5
AtrioventricularNode244.55
BDCA4+_DentriticCells538.25
Bonemarrow251.35
BronchialEpithelialCells170
CD105+_Endothelial802.7
CD14+_Monocytes430.05
CD19+_BCells(neg._sel.)418.1
CD33+_Myeloid763.85
CD34+717.75
CD4+_Tcells1016.35
CD56+_NKCells532.35
CD71+_EarlyErythroid652.05
CD8+_Tcells589
CardiacMyocytes704.5
Caudatenucleus196.7
Cerebellum207.8
CerebellumPeduncles228.1
CiliaryGanglion213.7
CingulateCortex210.85
Colorectaladenocarcinoma532.85
DorsalRootGanglion225.9
FetalThyroid166.8
Fetalbrain191.8
Fetalliver390.95
Fetallung130
GlobusPallidus188.45
Heart852.35
Hypothalamus154.7
Kidney173.35
Leukemia_chronicMyelogenousK-562199.55
Leukemia_promyelocytic-HL-60151.55
Leukemialymphoblastic(MOLT-4)119.45
Liver409.5
Lung143.95
Lymphnode167.55
Lymphoma_burkitts(Daudi)279.85
Lymphoma_burkitts(Raji)892.35
MedullaOblongata157.5
OccipitalLobe211.65
OlfactoryBulb135.35
Ovary153.7
Pancreas140.4
PancreaticIslet253.2
ParietalLobe124.35
Pituitary204.7
Placenta247.95
Pons239.65
PrefrontalCortex309.45
Prostate238.95
Salivarygland452.05
SkeletalMuscle68.95
Skin271.85
SmoothMuscle186.75
Spinalcord306.4
SubthalamicNucleus250.8
SuperiorCervicalGanglion305.5
TemporalLobe213.85
Testis228.35
TestisGermCell121.1
TestisIntersitial143.5
TestisLeydigCell174.75
TestisSeminiferousTubule182.05
Thalamus248.35
Thymus103.8
Thyroid375.45
Tongue241.95
Tonsil198.4
Trachea248.95
TrigeminalGanglion225.65
Uterus141.85
UterusCorpus87.75
WholeBlood116
Wholebrain118.8
colon608.1
pineal_day988.38
pineal_night1029.58
retina1002.425
small_intestine668.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_6486_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala12.25 ± 0.2
Basal Forebrain12.01 ± 0.19
Basal Part of Pons12.22 ± 0.18
Cerebellar Cortex12.03 ± 0.17
Cerebellar Nuclei11.96 ± 0.27
Claustrum12.17 ± 0.26
Epithalamus11.92 ± 0.34
Frontal Lobe12.21 ± 0.31
Globus Pallidus11.7 ± 0.26
Hypothalamus12.45 ± 0.29
Insula12.22 ± 0.26
Limbic Lobe12.26 ± 0.32
Mesencephalon12.16 ± 0.28
Myelencephalon12.14 ± 0.3
Occipital Lobe12.19 ± 0.26
Parietal Lobe12.19 ± 0.28
Pontine Tegmentum12.21 ± 0.28
Striatum12.25 ± 0.28
Subthalamus12.2 ± 0.39
Temporal Lobe12.22 ± 0.29
Thalamus12.11 ± 0.17
White Matter11.97 ± 0.21
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00002050 12 140 151 EHGLIFMETSAK Peptide Atlas
RAB2A_HUMAN_0 0 0 0 GAAGALLVYDITR PRIDE
RAB2A_HUMAN_0 0 0 0 TASNVEEAFINTAK PRIDE
RAB2A_HUMAN_0 0 0 0 YIIIGDTGVGK PRIDE
RAB2A_HUMAN_106 15 106 120 QHSNSNMVIMLIGNK PRIDE
RAB2A_HUMAN_106 21 106 126 QHSNSNMVIMLIGNKSDLESR PRIDE
RAB2A_HUMAN_140 12 140 151 EHGLIFMETSAK PRIDE
RAB2A_HUMAN_151 14 151 164 TASNVEEAFINTAK PRIDE
RAB2A_HUMAN_151 19 151 169 TASNVEEAFINTAKEIYEK PRIDE
RAB2A_HUMAN_152 14 152 165 TASNVEEAFINTAK PRIDE
RAB2A_HUMAN_170 16 170 185 IQEGVFDINNEANGIK PRIDE
RAB2A_HUMAN_19 11 19 29 SCLLLQFTDKR PRIDE
RAB2A_HUMAN_56 13 56 68 LQIWDTAGQESFR PRIDE
RAB2A_HUMAN_77 13 77 89 GAAGALLVYDITR PRIDE
RAB2A_HUMAN_77 14 77 90 GAAGALLVYDITRR PRIDE
RAB2A_HUMAN_8 11 8 18 YIIIGDTGVGK PRIDE
RAB2A_HUMAN_9 11 9 19 YIIIGDTGVGK PRIDE
RAB2A_HUMAN_91 14 91 104 DTFNHLTTWLEDAR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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