AutismKB 2.0

Annotation Detail for RAB3A


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Basic Information Top
Gene Symbol:RAB3A ( - )
Gene Full Name: RAB3A, member RAS oncogene family
Band: 19p13.11
Quick LinksEntrez ID:5864; OMIM: 179490; Uniprot ID:RAB3A_HUMAN; ENSEMBL ID: ENSG00000105649; HGNC ID: 9777
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus18 / 56401231
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult56 / 193912128
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor3 / 26384511
glioma3 / 10688328
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor6 / 10312758
lymphoma0 / 717550 
non-neoplasia3 / 9725030
normal106 / 336030731
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS8 / 12568063
prostate cancer2 / 10268019
retinoblastoma4 / 4635686
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain110 / 110098999
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye20 / 21105494
heart0 / 896260 
intestine1 / 2344724
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung8 / 33697423
lymph0 / 442700 
lymph node0 / 916100 
mammary gland2 / 15327113
mouth0 / 670520 
muscle0 / 1077150 
nerve1 / 1576863
ovary2 / 10205119
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate2 / 18934510
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis2 / 3304426
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204974_at
Cell line Expression level Expression bar
721_B_lymphoblasts13.4
Adipocyte15.75
AdrenalCortex33.85
Adrenalgland24.55
Amygdala339.5
Appendix21.5
AtrioventricularNode14.35
BDCA4+_DentriticCells17.7
Bonemarrow17.7
BronchialEpithelialCells13.7
CD105+_Endothelial10.95
CD14+_Monocytes13.65
CD19+_BCells(neg._sel.)9.8
CD33+_Myeloid17.25
CD34+10.2
CD4+_Tcells13.35
CD56+_NKCells13.8
CD71+_EarlyErythroid11.35
CD8+_Tcells9.75
CardiacMyocytes27.1
Caudatenucleus209.6
Cerebellum148.9
CerebellumPeduncles237.55
CiliaryGanglion16.25
CingulateCortex396.55
Colorectaladenocarcinoma14.7
DorsalRootGanglion16.5
FetalThyroid17.8
Fetalbrain67.1
Fetalliver13.35
Fetallung12.15
GlobusPallidus135.85
Heart45.5
Hypothalamus187.35
Kidney17.85
Leukemia_chronicMyelogenousK-56215
Leukemia_promyelocytic-HL-6015.5
Leukemialymphoblastic(MOLT-4)13.65
Liver25.1
Lung17.4
Lymphnode14.05
Lymphoma_burkitts(Daudi)21.8
Lymphoma_burkitts(Raji)33.65
MedullaOblongata233.9
OccipitalLobe346.5
OlfactoryBulb13.15
Ovary12.65
Pancreas14.55
PancreaticIslet20.1
ParietalLobe224.6
Pituitary60.85
Placenta14.7
Pons266.35
PrefrontalCortex754.85
Prostate19.85
Salivarygland15.45
SkeletalMuscle26.9
Skin12.75
SmoothMuscle15.65
Spinalcord52.2
SubthalamicNucleus186.1
SuperiorCervicalGanglion39.15
TemporalLobe236.05
Testis12.7
TestisGermCell13
TestisIntersitial13.5
TestisLeydigCell18.4
TestisSeminiferousTubule14.35
Thalamus777.6
Thymus11.3
Thyroid17.3
Tongue19.4
Tonsil26.5
Trachea14.85
TrigeminalGanglion26.6
Uterus14.25
UterusCorpus24.65
WholeBlood12.3
Wholebrain339.1
colon17.05
pineal_day276.76
pineal_night275
retina46.975
small_intestine14.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10162_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.05 ± 0.51
Basal Forebrain5.58 ± 0.23
Basal Part of Pons6.25 ± 0.17
Cerebellar Cortex5.88 ± 0.29
Cerebellar Nuclei5.61 ± 0.49
Claustrum6.12 ± 0.36
Epithalamus4.74 ± 0.78
Frontal Lobe6.09 ± 0.46
Globus Pallidus4.63 ± 0.47
Hypothalamus5.48 ± 0.77
Insula6 ± 0.17
Limbic Lobe6.3 ± 0.41
Mesencephalon5.83 ± 0.59
Myelencephalon5.9 ± 0.62
Occipital Lobe5.97 ± 0.41
Parietal Lobe5.94 ± 0.47
Pontine Tegmentum5.7 ± 0.48
Striatum5.51 ± 0.56
Subthalamus5.32 ± 0.27
Temporal Lobe6.08 ± 0.39
Thalamus6.02 ± 0.4
White Matter3.63 ± 0.65
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rab3aHYHypothalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00064410 7 137 143 CDMEDER Peptide Atlas
RAB3A_HUMAN_121 15 121 135 TYSWDNAQVLLVGNK PRIDE
RAB3A_HUMAN_178 8 178 185 LVDVICEK PRIDE
RAB3A_HUMAN_24 11 24 34 ILIIGNSSVGK PRIDE
RAB3A_HUMAN_25 11 25 35 ILIIGNSSVGK PRIDE
RAB3A_HUMAN_70 13 70 82 IKLQIWDTAGQER PRIDE
RAB3A_HUMAN_72 11 72 82 LQIWDTAGQER PRIDE
RAB3A_HUMAN_85 8 85 92 TITTAYYR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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