AutismKB 2.0

Annotation Detail for RAB13


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Basic Information Top
Gene Symbol:RAB13 ( - )
Gene Full Name: RAB13, member RAS oncogene family
Band: 1q21.3
Quick LinksEntrez ID:5872; OMIM: 602672; Uniprot ID:RAB13_HUMAN; ENSEMBL ID: ENSG00000143545; HGNC ID: 9762
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body7 / 7076198
blastocyst8 / 62319128
fetus17 / 56401230
neonate1 / 3109732
infant1 / 2362042
juvenile2 / 5555635
adult84 / 193912143
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor3 / 12794234
bladder carcinoma0 / 174750 
breast (mammary gland) tumor11 / 94178116
cervical tumor0 / 343660 
chondrosarcoma18 / 82823217
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor5 / 26384518
glioma6 / 10688356
head and neck tumor2 / 13630214
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor8 / 9635983
lung tumor8 / 10312777
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal124 / 336030736
ovarian tumor8 / 76682104
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer7 / 10268068
retinoblastoma0 / 463560 
skin tumor13 / 124949104
soft tissue/muscle tissue tumor6 / 12519147
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland3 / 3319790
ascites2 / 4001549
bladder1 / 2975733
blood6 / 12347848
bone11 / 71655153
bone marrow2 / 4880140
brain17 / 110098915
cervix0 / 481710 
connective tissue6 / 14925540
ear3 / 16212185
embryonic tissue23 / 215722106
esophagus0 / 202090 
eye9 / 21105442
heart5 / 8962655
intestine8 / 23447234
kidney9 / 21177742
larynx1 / 2414541
liver34 / 207743163
lung26 / 33697477
lymph0 / 442700 
lymph node0 / 916100 
mammary gland15 / 15327197
mouth0 / 670520 
muscle3 / 10771527
nerve3 / 15768190
ovary11 / 102051107
pancreas6 / 21481227
parathyroid0 / 205390 
pharynx3 / 4132872
pituitary gland0 / 165850 
placenta5 / 28082517
prostate13 / 18934568
salivary gland1 / 2015549
skin19 / 21057490
spleen1 / 5395218
stomach8 / 9661982
testis3 / 3304429
thymus2 / 8113124
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord3 / 13680219
uterus11 / 23287847
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202252_at
Cell line Expression level Expression bar
721_B_lymphoblasts91.05
Adipocyte1397.75
AdrenalCortex450.5
Adrenalgland331.1
Amygdala99.2
Appendix317.3
AtrioventricularNode130.75
BDCA4+_DentriticCells117.55
Bonemarrow275.7
BronchialEpithelialCells545.4
CD105+_Endothelial398.9
CD14+_Monocytes122.45
CD19+_BCells(neg._sel.)43.45
CD33+_Myeloid126.25
CD34+310.75
CD4+_Tcells31.65
CD56+_NKCells16.3
CD71+_EarlyErythroid310.2
CD8+_Tcells15.15
CardiacMyocytes782.6
Caudatenucleus98.3
Cerebellum73.75
CerebellumPeduncles97.1
CiliaryGanglion126.8
CingulateCortex101.5
Colorectaladenocarcinoma169.85
DorsalRootGanglion133.1
FetalThyroid818.25
Fetalbrain109.4
Fetalliver166
Fetallung703.35
GlobusPallidus59.35
Heart123.15
Hypothalamus281.5
Kidney221.05
Leukemia_chronicMyelogenousK-562111.7
Leukemia_promyelocytic-HL-6050.6
Leukemialymphoblastic(MOLT-4)36.35
Liver149.05
Lung469.5
Lymphnode267.2
Lymphoma_burkitts(Daudi)55.8
Lymphoma_burkitts(Raji)59.15
MedullaOblongata96.45
OccipitalLobe44.15
OlfactoryBulb475.75
Ovary236.2
Pancreas391.9
PancreaticIslet770.7
ParietalLobe92.5
Pituitary123.65
Placenta220.65
Pons85.8
PrefrontalCortex193.35
Prostate742.65
Salivarygland291.75
SkeletalMuscle134.65
Skin203.5
SmoothMuscle2000.05
Spinalcord385.55
SubthalamicNucleus73.85
SuperiorCervicalGanglion176
TemporalLobe112.35
Testis330.95
TestisGermCell654.1
TestisIntersitial384.7
TestisLeydigCell276.75
TestisSeminiferousTubule339.25
Thalamus101.25
Thymus80.95
Thyroid664.2
Tongue252.2
Tonsil181.75
Trachea283
TrigeminalGanglion127.8
Uterus423.95
UterusCorpus518.5
WholeBlood71.6
Wholebrain76.7
colon285.95
pineal_day139.2
pineal_night139.22
retina348.275
small_intestine258.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P46369
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.18 ± 0.52
Basal Forebrain5.73 ± 0.3
Basal Part of Pons4.95 ± 0.39
Cerebellar Cortex5.09 ± 0.34
Cerebellar Nuclei5.18 ± 0.36
Claustrum4.79 ± 0.8
Epithalamus6.56 ± 0.37
Frontal Lobe5.23 ± 0.51
Globus Pallidus6.75 ± 0.5
Hypothalamus5.42 ± 0.54
Insula5.29 ± 0.21
Limbic Lobe5.07 ± 0.58
Mesencephalon5.49 ± 0.55
Myelencephalon5.42 ± 0.49
Occipital Lobe5.4 ± 0.59
Parietal Lobe5.2 ± 0.53
Pontine Tegmentum5.29 ± 0.56
Striatum5.88 ± 0.56
Subthalamus4.6 ± 0.36
Temporal Lobe5.21 ± 0.49
Thalamus5.5 ± 0.46
White Matter4.86 ± 0.79
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rab13CBCerebellum40.48
74
Rab13CTXCerebral cortex100
89.65
Rab13HIPHippocampal region63.88
100
Rab13HPFHippocampal formation63.96
95.77
Rab13HYHypothalamus100
100
Rab13LSXLateral septal complex75.17
59.81
Rab13MBMidbrain78.91
81.12
Rab13MYMedulla100
100
Rab13OLFOlfactory bulb100
100
Rab13PPons88.28
100
Rab13PALPallidum83.33
88.39
Rab13RHPRetrohippocampal region64.88
66.28
Rab13sAMYStriatum-like amygdalar nuclei100
100
Rab13STRStriatum85.65
73.82
Rab13STRdStriatum dorsal region72.8
60.91
Rab13STRvStriatum ventral region100
96.61
Rab13THThalamus88.6
85.82
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00035863 11 11 21 LLLIGDSGVGK Peptide Atlas
RAB13_HUMAN_154 14 154 167 SSMNVDEAFSSLAR PRIDE
RAB13_HUMAN_169 8 169 176 ILLKSGGR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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