AutismKB 2.0

Annotation Detail for RAD23B


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Basic Information Top
Gene Symbol:RAD23B ( HHR23B,HR23B,P58 )
Gene Full Name: RAD23 homolog B (S. cerevisiae)
Band: 9q31.2
Quick LinksEntrez ID:5887; OMIM: 600062; Uniprot ID:RD23B_HUMAN; ENSEMBL ID: ENSG00000119318; HGNC ID: 9813
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body16 / 70761226
blastocyst4 / 6231964
fetus43 / 56401276
neonate6 / 31097192
infant1 / 2362042
juvenile8 / 55556143
adult305 / 1939121157
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma8 / 17475457
breast (mammary gland) tumor4 / 9417842
cervical tumor1 / 3436629
chondrosarcoma7 / 8282384
colorectal tumor15 / 114246131
esophageal tumor0 / 172900 
gastrointestinal tumor9 / 11936975
germ cell tumor21 / 26384579
glioma4 / 10688337
head and neck tumor20 / 136302146
kidney tumor5 / 6895972
leukemia9 / 9584293
liver tumor8 / 9635983
lung tumor5 / 10312748
lymphoma8 / 71755111
non-neoplasia1 / 9725010
normal429 / 3360307127
ovarian tumor5 / 7668265
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS10 / 12568079
prostate cancer11 / 102680107
retinoblastoma6 / 46356129
skin tumor13 / 124949104
soft tissue/muscle tissue tumor9 / 12519171
uterine tumor7 / 9025777
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland1 / 3319730
ascites1 / 4001524
bladder7 / 29757235
blood6 / 12347848
bone5 / 7165569
bone marrow7 / 48801143
brain68 / 110098961
cervix5 / 48171103
connective tissue19 / 149255127
ear2 / 16212123
embryonic tissue25 / 215722115
esophagus0 / 202090 
eye19 / 21105490
heart11 / 89626122
intestine23 / 23447298
kidney16 / 21177775
larynx2 / 2414582
liver22 / 207743105
lung124 / 336974367
lymph3 / 4427067
lymph node8 / 9161087
mammary gland41 / 153271267
mouth13 / 67052193
muscle12 / 107715111
nerve1 / 1576863
ovary6 / 10205158
pancreas10 / 21481246
parathyroid2 / 2053997
pharynx1 / 4132824
pituitary gland2 / 16585120
placenta58 / 280825206
prostate17 / 18934589
salivary gland1 / 2015549
skin34 / 210574161
spleen0 / 539520 
stomach10 / 96619103
testis32 / 33044296
thymus5 / 8113161
thyroid5 / 47473105
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord2 / 13680146
uterus25 / 232878107
vascular7 / 51780135
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201223_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts950.7
Adipocyte225.7
AdrenalCortex98.55
Adrenalgland143.6
Amygdala440.85
Appendix67.45
AtrioventricularNode80.7
BDCA4+_DentriticCells147.45
Bonemarrow67.45
BronchialEpithelialCells430.45
CD105+_Endothelial411.85
CD14+_Monocytes207.65
CD19+_BCells(neg._sel.)262.15
CD33+_Myeloid358.85
CD34+307.4
CD4+_Tcells98.4
CD56+_NKCells199.25
CD71+_EarlyErythroid211.4
CD8+_Tcells132.6
CardiacMyocytes272.45
Caudatenucleus143.25
Cerebellum177.25
CerebellumPeduncles209.7
CiliaryGanglion89.7
CingulateCortex238.9
Colorectaladenocarcinoma473.55
DorsalRootGanglion129.5
FetalThyroid155.6
Fetalbrain194.7
Fetalliver173.4
Fetallung156
GlobusPallidus120.05
Heart58.2
Hypothalamus190.8
Kidney71.45
Leukemia_chronicMyelogenousK-562200.5
Leukemia_promyelocytic-HL-60498.45
Leukemialymphoblastic(MOLT-4)137.9
Liver82.6
Lung105.95
Lymphnode122.05
Lymphoma_burkitts(Daudi)350.7
Lymphoma_burkitts(Raji)404.05
MedullaOblongata153.05
OccipitalLobe184.65
OlfactoryBulb126.1
Ovary107.75
Pancreas156.9
PancreaticIslet283.55
ParietalLobe164.4
Pituitary222.15
Placenta341.1
Pons103.35
PrefrontalCortex302.35
Prostate264.15
Salivarygland143.75
SkeletalMuscle100.8
Skin164.65
SmoothMuscle352.75
Spinalcord144
SubthalamicNucleus164.4
SuperiorCervicalGanglion97.55
TemporalLobe88.95
Testis99.15
TestisGermCell140.1
TestisIntersitial60.35
TestisLeydigCell55
TestisSeminiferousTubule78.25
Thalamus205.7
Thymus76.9
Thyroid319.85
Tongue133.6
Tonsil132.5
Trachea125.55
TrigeminalGanglion71.1
Uterus160.65
UterusCorpus56.85
WholeBlood234.65
Wholebrain229.55
colon282.1
pineal_day232.5
pineal_night262.42
retina200.45
small_intestine298.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P406664
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.35 ± 0.27
Basal Forebrain7 ± 0.24
Basal Part of Pons7.32 ± 0.23
Cerebellar Cortex7.33 ± 0.25
Cerebellar Nuclei6.84 ± 0.35
Claustrum7.19 ± 0.4
Epithalamus6.84 ± 0.14
Frontal Lobe7.02 ± 0.29
Globus Pallidus7.1 ± 0.17
Hypothalamus6.79 ± 0.26
Insula7.09 ± 0.26
Limbic Lobe7.33 ± 0.28
Mesencephalon6.95 ± 0.35
Myelencephalon7.07 ± 0.3
Occipital Lobe7.36 ± 0.3
Parietal Lobe7.16 ± 0.32
Pontine Tegmentum7.08 ± 0.24
Striatum6.86 ± 0.25
Subthalamus6.98 ± 0.31
Temporal Lobe7.18 ± 0.29
Thalamus7.1 ± 0.28
White Matter7.16 ± 0.04
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rad23bCBCerebellum54.56
53.83
Rad23bCTXCerebral cortex59.47
57.21
Rad23bHIPHippocampal region60.88
59.55
Rad23bHPFHippocampal formation59.06
56.94
Rad23bHYHypothalamus62.42
60.77
Rad23bLSXLateral septal complex55.14
53.01
Rad23bMBMidbrain54.4
53.24
Rad23bMYMedulla61.79
60.35
Rad23bOLFOlfactory bulb64.14
58
Rad23bPPons59.2
57.7
Rad23bPALPallidum54.57
53.37
Rad23bRHPRetrohippocampal region56.82
54.12
Rad23bsAMYStriatum-like amygdalar nuclei57.26
54.87
Rad23bSTRStriatum53.31
51.99
Rad23bSTRdStriatum dorsal region52.74
51.54
Rad23bSTRvStriatum ventral region52.35
51.41
Rad23bTHThalamus65.96
65.77
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00036408 11 68 78 NFVVVMVTKPK Peptide Atlas
RD23B_HUMAN_221 13 221 233 AVEYLLMGIPGDR PRIDE
RD23B_HUMAN_281 9 281 289 NQPQFQQMR PRIDE
RD23B_HUMAN_289 19 289 307 QIIQQNPSLLPALLQQIGR PRIDE
RD23B_HUMAN_290 19 290 308 QIIQQNPSLLPALLQQIGR PRIDE
RD23B_HUMAN_296 13 296 308 PSLLPALLQQIGR PRIDE
RD23B_HUMAN_6 18 6 23 TLQQQTFKIDIDPEETVK PRIDE
RD23B_HUMAN_67 11 67 77 NFVVVMVTKPK PRIDE
RD23B_HUMAN_68 11 68 78 NFVVVMVTKPK PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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