AutismKB 2.0

Annotation Detail for RAD51


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Basic Information Top
Gene Symbol:RAD51 ( BRCC5,HRAD51,HsRad51,HsT16930,RAD51A,RECA )
Gene Full Name: RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae)
Band: 15q15.1
Quick LinksEntrez ID:5888; OMIM: 179617; Uniprot ID:RAD51_HUMAN; ENSEMBL ID: ENSG00000051180; HGNC ID: 9817
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst4 / 6231964
fetus7 / 56401212
neonate0 / 310970 
infant2 / 2362084
juvenile2 / 5555635
adult33 / 193912117
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor6 / 11424652
esophageal tumor0 / 172900 
gastrointestinal tumor6 / 11936950
germ cell tumor12 / 26384545
glioma2 / 10688318
head and neck tumor1 / 1363027
kidney tumor3 / 6895943
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma3 / 7175541
non-neoplasia0 / 972500 
normal44 / 336030713
ovarian tumor2 / 7668226
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS25 / 125680198
prostate cancer2 / 10268019
retinoblastoma5 / 46356107
skin tumor6 / 12494948
soft tissue/muscle tissue tumor8 / 12519163
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites1 / 4001524
bladder0 / 297570 
blood2 / 12347816
bone1 / 7165513
bone marrow4 / 4880181
brain20 / 110098918
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue8 / 21572237
esophagus0 / 202090 
eye6 / 21105428
heart1 / 8962611
intestine11 / 23447246
kidney3 / 21177714
larynx0 / 241450 
liver1 / 2077434
lung1 / 3369742
lymph1 / 4427022
lymph node0 / 916100 
mammary gland4 / 15327126
mouth0 / 670520 
muscle4 / 10771537
nerve0 / 157680 
ovary5 / 10205148
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta11 / 28082539
prostate2 / 18934510
salivary gland0 / 201550 
skin6 / 21057428
spleen0 / 539520 
stomach3 / 9661931
testis9 / 33044227
thymus4 / 8113149
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus7 / 23287830
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205023_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.15
Adipocyte7.15
AdrenalCortex8.6
Adrenalgland6.65
Amygdala7.6
Appendix8.7
AtrioventricularNode9.95
BDCA4+_DentriticCells7.55
Bonemarrow7.85
BronchialEpithelialCells7
CD105+_Endothelial7.65
CD14+_Monocytes8
CD19+_BCells(neg._sel.)8
CD33+_Myeloid14.8
CD34+9.4
CD4+_Tcells8
CD56+_NKCells9
CD71+_EarlyErythroid7.25
CD8+_Tcells6.95
CardiacMyocytes13.75
Caudatenucleus6.65
Cerebellum6.05
CerebellumPeduncles8.75
CiliaryGanglion7
CingulateCortex7.7
Colorectaladenocarcinoma7.5
DorsalRootGanglion6.95
FetalThyroid7.45
Fetalbrain7
Fetalliver6.5
Fetallung6.05
GlobusPallidus5.8
Heart12.45
Hypothalamus7.9
Kidney6.7
Leukemia_chronicMyelogenousK-5626.65
Leukemia_promyelocytic-HL-606.65
Leukemialymphoblastic(MOLT-4)5.75
Liver10.35
Lung8.15
Lymphnode6
Lymphoma_burkitts(Daudi)9.65
Lymphoma_burkitts(Raji)11.65
MedullaOblongata6.75
OccipitalLobe6.55
OlfactoryBulb5.85
Ovary5
Pancreas6.4
PancreaticIslet8.2
ParietalLobe8.45
Pituitary8.5
Placenta7.2
Pons7.15
PrefrontalCortex8.9
Prostate8.5
Salivarygland6.2
SkeletalMuscle9.65
Skin6.65
SmoothMuscle8.3
Spinalcord7.85
SubthalamicNucleus7.5
SuperiorCervicalGanglion10.95
TemporalLobe6.9
Testis6.35
TestisGermCell6.15
TestisIntersitial6.55
TestisLeydigCell7.8
TestisSeminiferousTubule6.4
Thalamus7.8
Thymus5.85
Thyroid9.3
Tongue9.25
Tonsil7.35
Trachea6.2
TrigeminalGanglion8.55
Uterus6.05
UterusCorpus7.65
WholeBlood7.95
Wholebrain6.25
colon7.55
pineal_day9.4
pineal_night9.34
retina9.225
small_intestine7.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_15701_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala1.96 ± 1.35
Basal Forebrain1.39 ± 0.44
Basal Part of Pons1.27 ± 0.43
Cerebellar Cortex1.52 ± 0.85
Cerebellar Nuclei1.86 ± 0.63
Claustrum2.23 ± 0.8
Epithalamus1.5 ± 0.58
Frontal Lobe1.4 ± 0.69
Globus Pallidus1.74 ± 0.47
Hypothalamus1.46 ± 0.71
Insula1.21 ± 0.55
Limbic Lobe1.47 ± 0.64
Mesencephalon1.63 ± 0.74
Myelencephalon1.51 ± 0.7
Occipital Lobe1.49 ± 0.65
Parietal Lobe1.39 ± 0.93
Pontine Tegmentum1.51 ± 0.8
Striatum1.48 ± 0.65
Subthalamus1.87 ± 0.23
Temporal Lobe1.45 ± 0.77
Thalamus1.39 ± 0.65
White Matter1.66 ± 0.68
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rad51CBCerebellum71.29
100
Rad51CTXCerebral cortex100
100
Rad51HIPHippocampal region100
100
Rad51HPFHippocampal formation100
100
Rad51HYHypothalamus100
100
Rad51LSXLateral septal complex100
100
Rad51MBMidbrain100
100
Rad51MYMedulla100
100
Rad51OLFOlfactory bulb100
100
Rad51PPons100
100
Rad51PALPallidum100
100
Rad51RHPRetrohippocampal region100
100
Rad51sAMYStriatum-like amygdalar nuclei100
100
Rad51STRStriatum100
100
Rad51STRdStriatum dorsal region100
100
Rad51STRvStriatum ventral region100
100
Rad51THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00071736 18 40 57 KLEEAGFHTVEAVAYAPK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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