AutismKB 2.0

Annotation Detail for RAD52


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Basic Information Top
Gene Symbol:RAD52 ( - )
Gene Full Name: RAD52 homolog (S. cerevisiae)
Band: 12p13.33
Quick LinksEntrez ID:5893; OMIM: 600392; Uniprot ID:RAD52_HUMAN; ENSEMBL ID: ENSG00000002016; HGNC ID: 9824
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst2 / 6231932
fetus17 / 56401230
neonate0 / 310970 
infant2 / 2362084
juvenile0 / 555560 
adult38 / 193912119
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma8 / 8282396
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor19 / 26384572
glioma2 / 10688318
head and neck tumor3 / 13630222
kidney tumor1 / 6895914
leukemia3 / 9584231
liver tumor0 / 963590 
lung tumor2 / 10312719
lymphoma1 / 7175513
non-neoplasia1 / 9725010
normal55 / 336030716
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood3 / 12347824
bone1 / 7165513
bone marrow1 / 4880120
brain29 / 110098926
cervix0 / 481710 
connective tissue7 / 14925546
ear0 / 162120 
embryonic tissue6 / 21572227
esophagus0 / 202090 
eye0 / 2110540 
heart1 / 8962611
intestine1 / 2344724
kidney2 / 2117779
larynx0 / 241450 
liver0 / 2077430 
lung7 / 33697420
lymph0 / 442700 
lymph node3 / 9161032
mammary gland4 / 15327126
mouth1 / 6705214
muscle1 / 1077159
nerve0 / 157680 
ovary1 / 1020519
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta2 / 2808257
prostate3 / 18934515
salivary gland0 / 201550 
skin3 / 21057414
spleen1 / 5395218
stomach0 / 966190 
testis15 / 33044245
thymus4 / 8113149
thyroid1 / 4747321
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 210630_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.8
Adipocyte4.7
AdrenalCortex5.65
Adrenalgland4.2
Amygdala4.95
Appendix6.1
AtrioventricularNode5.6
BDCA4+_DentriticCells4.9
Bonemarrow4.85
BronchialEpithelialCells4.65
CD105+_Endothelial4.75
CD14+_Monocytes5.1
CD19+_BCells(neg._sel.)5
CD33+_Myeloid6
CD34+6.05
CD4+_Tcells5.2
CD56+_NKCells5.4
CD71+_EarlyErythroid4.45
CD8+_Tcells4.7
CardiacMyocytes6.65
Caudatenucleus4.3
Cerebellum3.9
CerebellumPeduncles5.65
CiliaryGanglion3.9
CingulateCortex4.95
Colorectaladenocarcinoma4.8
DorsalRootGanglion5.2
FetalThyroid4.7
Fetalbrain4.75
Fetalliver4.2
Fetallung3.75
GlobusPallidus4.05
Heart6.65
Hypothalamus5.15
Kidney4.05
Leukemia_chronicMyelogenousK-5624.35
Leukemia_promyelocytic-HL-604.25
Leukemialymphoblastic(MOLT-4)3.75
Liver6.75
Lung5.15
Lymphnode3.95
Lymphoma_burkitts(Daudi)6.3
Lymphoma_burkitts(Raji)21.3
MedullaOblongata4.35
OccipitalLobe4.25
OlfactoryBulb3.8
Ovary3.4
Pancreas3.95
PancreaticIslet5.1
ParietalLobe5.15
Pituitary5.6
Placenta4.7
Pons4.75
PrefrontalCortex5.85
Prostate5.55
Salivarygland3.9
SkeletalMuscle6.6
Skin4.15
SmoothMuscle5.35
Spinalcord5.15
SubthalamicNucleus4.5
SuperiorCervicalGanglion6.35
TemporalLobe4.4
Testis4.1
TestisGermCell3.85
TestisIntersitial4.2
TestisLeydigCell4.85
TestisSeminiferousTubule4.1
Thalamus4.9
Thymus3.7
Thyroid5.95
Tongue5.65
Tonsil4.65
Trachea4
TrigeminalGanglion5.85
Uterus3.9
UterusCorpus4.65
WholeBlood5.15
Wholebrain4.1
colon4.8
pineal_day5.88
pineal_night5.74
retina5.775
small_intestine4.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_13416_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.08 ± 0.61
Basal Forebrain3.97 ± 0.32
Basal Part of Pons3.65 ± 0.58
Cerebellar Cortex4.03 ± 0.54
Cerebellar Nuclei3.76 ± 0.61
Claustrum3.93 ± 0.9
Epithalamus3.95 ± 0.27
Frontal Lobe3.68 ± 0.6
Globus Pallidus4.35 ± 0.85
Hypothalamus3.51 ± 0.45
Insula3.79 ± 0.46
Limbic Lobe4.05 ± 0.62
Mesencephalon3.92 ± 0.7
Myelencephalon3.87 ± 0.63
Occipital Lobe4.38 ± 0.69
Parietal Lobe4.01 ± 0.63
Pontine Tegmentum4.04 ± 0.61
Striatum3.97 ± 0.58
Subthalamus3.66 ± 0.33
Temporal Lobe3.78 ± 0.62
Thalamus3.93 ± 0.59
White Matter4.55 ± 1.21
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rad52CBCerebellum3.65
4.28
Rad52CTXCerebral cortex16.6
11.32
Rad52HIPHippocampal region13.93
13.4
Rad52HPFHippocampal formation12.48
11.15
Rad52HYHypothalamus0.71
0.57
Rad52LSXLateral septal complex1.14
0.84
Rad52MBMidbrain1.93
1.71
Rad52MYMedulla10.39
12.04
Rad52OLFOlfactory bulb8.15
5.78
Rad52PPons3.26
2.96
Rad52PALPallidum3.76
3.06
Rad52RHPRetrohippocampal region10.45
8.19
Rad52sAMYStriatum-like amygdalar nuclei1.56
1.11
Rad52STRStriatum4.74
3.27
Rad52STRdStriatum dorsal region4.45
3.06
Rad52STRvStriatum ventral region9.14
5.9
Rad52THThalamus5.62
4.21
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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