Annotation Detail for RALA
Basic Information Top
| Gene Symbol: | RALA ( MGC48949,RAL ) |
|---|---|
| Gene Full Name: | v-ral simian leukemia viral oncogene homolog A (ras related) |
| Band: | 7p14.1 |
| Quick Links | Entrez ID:5898; OMIM: 179550; Uniprot ID:RALA_HUMAN; ENSEMBL ID: ENSG00000006451; HGNC ID: 9839 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.6906
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 52 / 564012 | 92 | |
| neonate | 7 / 31097 | 225 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 3 / 55556 | 53 | |
| adult | 94 / 1939121 | 48 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 30 / 263845 | 113 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 8 / 68959 | 116 | |
| leukemia | 5 / 95842 | 52 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 203 / 3360307 | 60 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 8 / 125680 | 63 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 6 / 46356 | 129 | |
| skin tumor | 6 / 124949 | 48 | |
| soft tissue/muscle tissue tumor | 7 / 125191 | 55 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 1 / 29757 | 33 | |
| blood | 4 / 123478 | 32 | |
| bone | 6 / 71655 | 83 | |
| bone marrow | 4 / 48801 | 81 | |
| brain | 59 / 1100989 | 53 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 8 / 149255 | 53 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 18 / 215722 | 83 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 14 / 211054 | 66 | |
| heart | 2 / 89626 | 22 | |
| intestine | 20 / 234472 | 85 | |
| kidney | 13 / 211777 | 61 | |
| larynx | 1 / 24145 | 41 | |
| liver | 4 / 207743 | 19 | |
| lung | 16 / 336974 | 47 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 6 / 67052 | 89 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 10 / 214812 | 46 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 16 / 280825 | 56 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 13 / 210574 | 61 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 7 / 96619 | 72 | |
| testis | 27 / 330442 | 81 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 15 / 51780 | 289 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 214435_x_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 56.05 | |
| Adipocyte | 4.65 | |
| AdrenalCortex | 5.1 | |
| Adrenalgland | 3.8 | |
| Amygdala | 4.75 | |
| Appendix | 5.75 | |
| AtrioventricularNode | 3.75 | |
| BDCA4+_DentriticCells | 16.2 | |
| Bonemarrow | 4.4 | |
| BronchialEpithelialCells | 33.4 | |
| CD105+_Endothelial | 5.8 | |
| CD14+_Monocytes | 11.95 | |
| CD19+_BCells(neg._sel.) | 41.55 | |
| CD33+_Myeloid | 8.75 | |
| CD34+ | 11.6 | |
| CD4+_Tcells | 6.65 | |
| CD56+_NKCells | 15.8 | |
| CD71+_EarlyErythroid | 4.2 | |
| CD8+_Tcells | 8.2 | |
| CardiacMyocytes | 74.2 | |
| Caudatenucleus | 3.9 | |
| Cerebellum | 3.1 | |
| CerebellumPeduncles | 5.05 | |
| CiliaryGanglion | 3.5 | |
| CingulateCortex | 4.55 | |
| Colorectaladenocarcinoma | 5.5 | |
| DorsalRootGanglion | 3.45 | |
| FetalThyroid | 4.4 | |
| Fetalbrain | 4.85 | |
| Fetalliver | 3.7 | |
| Fetallung | 4.4 | |
| GlobusPallidus | 3.2 | |
| Heart | 6.05 | |
| Hypothalamus | 4.8 | |
| Kidney | 3.6 | |
| Leukemia_chronicMyelogenousK-562 | 14.2 | |
| Leukemia_promyelocytic-HL-60 | 10.6 | |
| Leukemialymphoblastic(MOLT-4) | 3.5 | |
| Liver | 5.75 | |
| Lung | 5.55 | |
| Lymphnode | 3.5 | |
| Lymphoma_burkitts(Daudi) | 7.15 | |
| Lymphoma_burkitts(Raji) | 79.1 | |
| MedullaOblongata | 4 | |
| OccipitalLobe | 4 | |
| OlfactoryBulb | 3.8 | |
| Ovary | 2.95 | |
| Pancreas | 3.75 | |
| PancreaticIslet | 4.8 | |
| ParietalLobe | 4.7 | |
| Pituitary | 4.75 | |
| Placenta | 4.7 | |
| Pons | 4.45 | |
| PrefrontalCortex | 5.5 | |
| Prostate | 5.2 | |
| Salivarygland | 3.6 | |
| SkeletalMuscle | 7.85 | |
| Skin | 3.5 | |
| SmoothMuscle | 186.75 | |
| Spinalcord | 4.7 | |
| SubthalamicNucleus | 4.75 | |
| SuperiorCervicalGanglion | 5.35 | |
| TemporalLobe | 4.05 | |
| Testis | 3.9 | |
| TestisGermCell | 3.75 | |
| TestisIntersitial | 4.15 | |
| TestisLeydigCell | 4.45 | |
| TestisSeminiferousTubule | 3.9 | |
| Thalamus | 4.45 | |
| Thymus | 3.55 | |
| Thyroid | 5.65 | |
| Tongue | 19.85 | |
| Tonsil | 4.4 | |
| Trachea | 3.75 | |
| TrigeminalGanglion | 4.6 | |
| Uterus | 3.65 | |
| UterusCorpus | 4.05 | |
| WholeBlood | 5 | |
| Wholebrain | 3.75 | |
| colon | 46 | |
| pineal_day | 5.6 | |
| pineal_night | 5.46 | |
| retina | 5.35 | |
| small_intestine | 25.9 | |
- Probe name: CUST_3672_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.23 ± 0.4 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.3 ± 0.16 | |
| Basal Part of Pons | 8.23 ± 0.24 | |
| Cerebellar Cortex | 8.05 ± 0.17 | |
| Cerebellar Nuclei | 8.38 ± 0.22 | |
| Claustrum | 8.15 ± 0.47 | |
| Epithalamus | 8.14 ± 0.46 | |
| Frontal Lobe | 8.42 ± 0.32 | |
| Globus Pallidus | 8.9 ± 0.21 | |
| Hypothalamus | 8.25 ± 0.35 | |
| Insula | 8.35 ± 0.38 | |
| Limbic Lobe | 8.45 ± 0.39 | |
| Mesencephalon | 8.41 ± 0.32 | |
| Myelencephalon | 8.36 ± 0.41 | |
| Occipital Lobe | 8.2 ± 0.4 | |
| Parietal Lobe | 8.29 ± 0.29 | |
| Pontine Tegmentum | 8.42 ± 0.33 | |
| Striatum | 8.54 ± 0.36 | |
| Subthalamus | 8.58 ± 0.16 | |
| Temporal Lobe | 8.38 ± 0.33 | |
| Thalamus | 8.44 ± 0.27 | |
| White Matter | 9.5 ± 0.16 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rala | CB | Cerebellum | 1.26 | |
| 1.5 | | |||
| Rala | CTX | Cerebral cortex | 9.55 | |
| 7.34 | | |||
| Rala | HIP | Hippocampal region | 6.59 | |
| 6.76 | | |||
| Rala | HPF | Hippocampal formation | 5.29 | |
| 4.96 | | |||
| Rala | HY | Hypothalamus | 2.45 | |
| 2.3 | | |||
| Rala | LSX | Lateral septal complex | 0.2 | |
| 0.14 | | |||
| Rala | MB | Midbrain | 1.52 | |
| 1.86 | | |||
| Rala | MY | Medulla | 2.95 | |
| 5.13 | | |||
| Rala | OLF | Olfactory bulb | 11.01 | |
| 8.42 | | |||
| Rala | P | Pons | 3.7 | |
| 5.97 | | |||
| Rala | PAL | Pallidum | 8.21 | |
| 8.18 | | |||
| Rala | RHP | Retrohippocampal region | 1.99 | |
| 1.51 | | |||
| Rala | sAMY | Striatum-like amygdalar nuclei | 3.79 | |
| 2.93 | | |||
| Rala | STR | Striatum | 3.65 | |
| 2.74 | | |||
| Rala | STRd | Striatum dorsal region | 2.38 | |
| 1.8 | | |||
| Rala | STRv | Striatum ventral region | 9.54 | |
| 6.63 | | |||
| Rala | TH | Thalamus | 4.12 | |
| 3.35 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00000612 | 12 | 162 | 173 | ANVDKVFFDLMR | Peptide Atlas |
| RALA_HUMAN_113 | 15 | 113 | 127 | VKEDENVPFLLVGNK | PRIDE |
| RALA_HUMAN_136 | 10 | 136 | 145 | QVSVEEAKNR | PRIDE |
| RALA_HUMAN_145 | 14 | 145 | 158 | AEQWNVNYVETSAK | PRIDE |
| RALA_HUMAN_159 | 14 | 159 | 172 | TRANVDKVFFDLMR | PRIDE |
| RALA_HUMAN_16 | 11 | 16 | 26 | VIMVGSGGVGK | PRIDE |
| RALA_HUMAN_161 | 12 | 161 | 172 | ANVDKVFFDLMR | PRIDE |
| RALA_HUMAN_162 | 12 | 162 | 173 | ANVDKVFFDLMR | PRIDE |
| RALA_HUMAN_167 | 7 | 167 | 173 | VFFDLMR | PRIDE |