AutismKB 2.0

Annotation Detail for RANBP1


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Basic Information Top
Gene Symbol:RANBP1 ( HTF9A,MGC88701 )
Gene Full Name: RAN binding protein 1
Band: 22q11.21
Quick LinksEntrez ID:5902; OMIM: 601180; Uniprot ID:RANG_HUMAN; ENSEMBL ID: ENSG00000099901; HGNC ID: 9847
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst5 / 6231980
fetus44 / 56401278
neonate8 / 31097257
infant0 / 236200 
juvenile0 / 555560 
adult109 / 193912156
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor3 / 9417831
cervical tumor2 / 3436658
chondrosarcoma4 / 8282348
colorectal tumor10 / 11424687
esophageal tumor0 / 172900 
gastrointestinal tumor4 / 11936933
germ cell tumor9 / 26384534
glioma12 / 106883112
head and neck tumor6 / 13630244
kidney tumor3 / 6895943
leukemia4 / 9584241
liver tumor3 / 9635931
lung tumor0 / 1031270 
lymphoma4 / 7175555
non-neoplasia2 / 9725020
normal195 / 336030758
ovarian tumor7 / 7668291
pancreatic tumor7 / 10461666
primitive neuroectodermal tumor of the CNS6 / 12568047
prostate cancer8 / 10268077
retinoblastoma3 / 4635664
skin tumor6 / 12494948
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland3 / 3319790
ascites4 / 4001599
bladder1 / 2975733
blood2 / 12347816
bone9 / 71655125
bone marrow0 / 488010 
brain42 / 110098938
cervix2 / 4817141
connective tissue2 / 14925513
ear2 / 16212123
embryonic tissue14 / 21572264
esophagus0 / 202090 
eye11 / 21105452
heart4 / 8962644
intestine19 / 23447281
kidney6 / 21177728
larynx1 / 2414541
liver17 / 20774381
lung39 / 336974115
lymph0 / 442700 
lymph node14 / 91610152
mammary gland7 / 15327145
mouth1 / 6705214
muscle0 / 1077150 
nerve0 / 157680 
ovary8 / 10205178
pancreas18 / 21481283
parathyroid1 / 2053948
pharynx3 / 4132872
pituitary gland0 / 165850 
placenta21 / 28082574
prostate12 / 18934563
salivary gland0 / 201550 
skin11 / 21057452
spleen0 / 539520 
stomach1 / 9661910
testis14 / 33044242
thymus1 / 8113112
thyroid2 / 4747342
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord8 / 13680584
uterus8 / 23287834
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202483_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts1414.25
Adipocyte60.55
AdrenalCortex35.05
Adrenalgland40.1
Amygdala57.2
Appendix24.7
AtrioventricularNode8.55
BDCA4+_DentriticCells202.1
Bonemarrow111.85
BronchialEpithelialCells295.8
CD105+_Endothelial554.85
CD14+_Monocytes88.75
CD19+_BCells(neg._sel.)136.1
CD33+_Myeloid84.7
CD34+501.25
CD4+_Tcells76.35
CD56+_NKCells141.75
CD71+_EarlyErythroid369.45
CD8+_Tcells55.4
CardiacMyocytes215.45
Caudatenucleus31.75
Cerebellum40.15
CerebellumPeduncles53.3
CiliaryGanglion7.55
CingulateCortex43.3
Colorectaladenocarcinoma289.25
DorsalRootGanglion12.45
FetalThyroid29.35
Fetalbrain55.35
Fetalliver99.15
Fetallung71.05
GlobusPallidus12.75
Heart31.05
Hypothalamus52.1
Kidney27.2
Leukemia_chronicMyelogenousK-5621553.6
Leukemia_promyelocytic-HL-60550.35
Leukemialymphoblastic(MOLT-4)398.8
Liver102.7
Lung129.9
Lymphnode39.4
Lymphoma_burkitts(Daudi)838.3
Lymphoma_burkitts(Raji)265.7
MedullaOblongata54.85
OccipitalLobe38.95
OlfactoryBulb40.15
Ovary21.45
Pancreas30.1
PancreaticIslet44.95
ParietalLobe29.7
Pituitary60.45
Placenta95.2
Pons15.95
PrefrontalCortex68.65
Prostate74.5
Salivarygland29.2
SkeletalMuscle28.4
Skin18.75
SmoothMuscle178.95
Spinalcord57.1
SubthalamicNucleus37.75
SuperiorCervicalGanglion8.1
TemporalLobe66.5
Testis239.75
TestisGermCell268.4
TestisIntersitial401.75
TestisLeydigCell193.85
TestisSeminiferousTubule295.4
Thalamus52.75
Thymus230.3
Thyroid67.6
Tongue26.4
Tonsil138.55
Trachea18.15
TrigeminalGanglion5.5
Uterus75.25
UterusCorpus44
WholeBlood34.65
Wholebrain115.5
colon140.35
pineal_day54.72
pineal_night62.44
retina43.7
small_intestine146.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P91590
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.98 ± 0.15
Basal Forebrain9.72 ± 0.23
Basal Part of Pons9.97 ± 0.13
Cerebellar Cortex9.99 ± 0.16
Cerebellar Nuclei10.04 ± 0.22
Claustrum9.88 ± 0.17
Epithalamus9.87 ± 0.24
Frontal Lobe9.93 ± 0.18
Globus Pallidus9.81 ± 0.17
Hypothalamus10.05 ± 0.17
Insula9.97 ± 0.23
Limbic Lobe9.83 ± 0.21
Mesencephalon9.89 ± 0.25
Myelencephalon9.85 ± 0.25
Occipital Lobe9.75 ± 0.23
Parietal Lobe9.93 ± 0.22
Pontine Tegmentum9.9 ± 0.21
Striatum9.4 ± 0.28
Subthalamus10.14 ± 0.23
Temporal Lobe9.95 ± 0.2
Thalamus9.81 ± 0.22
White Matter10.05 ± 0.15
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ranbp1CBCerebellum37.88
62.48
Ranbp1CTXCerebral cortex93.37
79.07
Ranbp1HIPHippocampal region59.64
99.25
Ranbp1HPFHippocampal formation75.81
96.32
Ranbp1HYHypothalamus56.33
52
Ranbp1LSXLateral septal complex56.86
51.22
Ranbp1MBMidbrain77.22
77.19
Ranbp1MYMedulla83.99
100
Ranbp1OLFOlfactory bulb70.69
63.77
Ranbp1PPons78.52
93.23
Ranbp1PALPallidum62.64
62.88
Ranbp1RHPRetrohippocampal region100
93.89
Ranbp1sAMYStriatum-like amygdalar nuclei68.13
61.11
Ranbp1STRStriatum49.68
39.62
Ranbp1STRdStriatum dorsal region47.76
37.72
Ranbp1STRvStriatum ventral region45.21
33.63
Ranbp1THThalamus76.38
69.54
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00000808 23 119 141 AWVWNTHADFADECPKPELLAIR Peptide Atlas
RANG_HUMAN_0 0 0 0 FASENDLPEWK PRIDE
RANG_HUMAN_0 0 0 0 TLEEDEEELFK PRIDE
RANG_HUMAN_118 23 118 140 AWVWNTHADFADECPKPELLAIR PRIDE
RANG_HUMAN_39 11 39 49 TLEEDEEELFK PRIDE
RANG_HUMAN_57 11 57 67 FASENDLPEWK PRIDE
RANG_HUMAN_57 13 57 69 FASENDLPEWKER PRIDE
RANG_HUMAN_72 16 72 87 TGDVKLLKHKEKGAIR PRIDE
RANG_HUMAN_73 15 73 87 GDVKLLKHKEKGAIR PRIDE
RANG_HUMAN_97 21 97 117 ICANHYITPMMELKPNAGSDR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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