AutismKB 2.0

Annotation Detail for RARRES2


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Basic Information Top
Gene Symbol:RARRES2 ( HP10433,TIG2 )
Gene Full Name: retinoic acid receptor responder (tazarotene induced) 2
Band: 7q36.1
Quick LinksEntrez ID:5919; OMIM: 601973; Uniprot ID:RARR2_HUMAN; ENSEMBL ID: ENSG00000106538; HGNC ID: 9868
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst8 / 62319128
fetus24 / 56401242
neonate2 / 3109764
infant3 / 23620127
juvenile0 / 555560 
adult94 / 193912148
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor2 / 17290115
gastrointestinal tumor1 / 1193698
germ cell tumor1 / 2638453
glioma1 / 1068839
head and neck tumor1 / 1363027
kidney tumor5 / 6895972
leukemia0 / 958420 
liver tumor7 / 9635972
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal137 / 336030740
ovarian tumor7 / 7668291
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue5 / 13106381
adrenal gland17 / 33197512
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain14 / 110098912
cervix1 / 4817120
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus2 / 2020998
eye16 / 21105475
heart12 / 89626133
intestine7 / 23447229
kidney15 / 21177770
larynx1 / 2414541
liver19 / 20774391
lung9 / 33697426
lymph0 / 442700 
lymph node0 / 916100 
mammary gland4 / 15327126
mouth0 / 670520 
muscle6 / 10771555
nerve0 / 157680 
ovary8 / 10205178
pancreas2 / 2148129
parathyroid12 / 20539584
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta10 / 28082535
prostate6 / 18934531
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach1 / 9661910
testis1 / 3304423
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord2 / 13680146
uterus5 / 23287821
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209496_at
Cell line Expression level Expression bar
721_B_lymphoblasts14.8
Adipocyte120.8
AdrenalCortex1231.05
Adrenalgland1839.25
Amygdala51.15
Appendix357.6
AtrioventricularNode57.8
BDCA4+_DentriticCells30.5
Bonemarrow40.35
BronchialEpithelialCells16.05
CD105+_Endothelial41
CD14+_Monocytes8.15
CD19+_BCells(neg._sel.)38.8
CD33+_Myeloid34.85
CD34+11.25
CD4+_Tcells50.55
CD56+_NKCells35.45
CD71+_EarlyErythroid42.1
CD8+_Tcells40.1
CardiacMyocytes55.95
Caudatenucleus45
Cerebellum31.9
CerebellumPeduncles42.1
CiliaryGanglion103.5
CingulateCortex37.1
Colorectaladenocarcinoma37.2
DorsalRootGanglion58.7
FetalThyroid44.35
Fetalbrain38.55
Fetalliver215.5
Fetallung212.65
GlobusPallidus32.8
Heart225.85
Hypothalamus84.85
Kidney52.25
Leukemia_chronicMyelogenousK-56227.25
Leukemia_promyelocytic-HL-6022.3
Leukemialymphoblastic(MOLT-4)22.8
Liver5372.8
Lung948.1
Lymphnode153.6
Lymphoma_burkitts(Daudi)42.25
Lymphoma_burkitts(Raji)58.75
MedullaOblongata42
OccipitalLobe31.4
OlfactoryBulb240.35
Ovary110.45
Pancreas289.45
PancreaticIslet164.25
ParietalLobe40.5
Pituitary78.4
Placenta42.3
Pons60.25
PrefrontalCortex47
Prostate196.8
Salivarygland47.25
SkeletalMuscle59.9
Skin36.9
SmoothMuscle41.55
Spinalcord112.6
SubthalamicNucleus35.95
SuperiorCervicalGanglion116.05
TemporalLobe45.7
Testis42.5
TestisGermCell28.1
TestisIntersitial37.7
TestisLeydigCell48.6
TestisSeminiferousTubule52.3
Thalamus63.9
Thymus41.2
Thyroid112.9
Tongue54.95
Tonsil85.3
Trachea43.35
TrigeminalGanglion68.05
Uterus273
UterusCorpus142.35
WholeBlood18.2
Wholebrain40.5
colon260.5
pineal_day58.84
pineal_night68.96
retina274.35
small_intestine127.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_15214_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.46 ± 0.42
Basal Forebrain6.88 ± 0.42
Basal Part of Pons6.04 ± 0.57
Cerebellar Cortex6.17 ± 0.24
Cerebellar Nuclei6.42 ± 0.54
Claustrum6.23 ± 0.32
Epithalamus8.14 ± 0.68
Frontal Lobe6.34 ± 0.42
Globus Pallidus7.88 ± 0.39
Hypothalamus6.83 ± 0.37
Insula6.26 ± 0.46
Limbic Lobe6.36 ± 0.65
Mesencephalon6.76 ± 0.56
Myelencephalon6.75 ± 0.52
Occipital Lobe7.2 ± 0.58
Parietal Lobe6.68 ± 0.39
Pontine Tegmentum6.55 ± 0.45
Striatum7.45 ± 0.52
Subthalamus6.48 ± 0.45
Temporal Lobe6.49 ± 0.39
Thalamus6.82 ± 0.41
White Matter6.26 ± 0.45
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rarres2CBCerebellum14.99
17.23
Rarres2CTXCerebral cortex10.87
4.96
Rarres2HIPHippocampal region6.45
6.34
Rarres2HPFHippocampal formation10.57
5.74
Rarres2HYHypothalamus10.22
6.87
Rarres2LSXLateral septal complex49.61
71.89
Rarres2MBMidbrain11.98
8.8
Rarres2MYMedulla26.49
17.03
Rarres2OLFOlfactory bulb15.38
6.61
Rarres2PPons12.39
7.39
Rarres2PALPallidum10.15
4.95
Rarres2RHPRetrohippocampal region14.2
4.67
Rarres2sAMYStriatum-like amygdalar nuclei13.03
7.38
Rarres2STRStriatum10.8
11.11
Rarres2STRdStriatum dorsal region5.59
5.53
Rarres2STRvStriatum ventral region5.43
2.04
Rarres2THThalamus12.92
9.71
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00009887 12 126 137 EAEEHQETQCLR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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