AutismKB 2.0

Annotation Detail for RARRES3


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:RARRES3 ( HRASLS4,MGC8906,PLA1/2-3,RIG1,TIG3 )
Gene Full Name: retinoic acid receptor responder (tazarotene induced) 3
Band: 11q12.3
Quick LinksEntrez ID:5920; OMIM: 605092; Uniprot ID:TIG3_HUMAN; ENSEMBL ID: ENSG00000133321; HGNC ID: 9869
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus3 / 5640125
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult58 / 193912129
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor1 / 3436629
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor10 / 11936983
germ cell tumor6 / 26384522
glioma11 / 106883102
head and neck tumor2 / 13630214
kidney tumor4 / 6895958
leukemia0 / 958420 
liver tumor3 / 9635931
lung tumor3 / 10312729
lymphoma2 / 7175527
non-neoplasia3 / 9725030
normal65 / 336030719
ovarian tumor3 / 7668239
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites3 / 4001574
bladder2 / 2975767
blood3 / 12347824
bone0 / 716550 
bone marrow1 / 4880120
brain16 / 110098914
cervix1 / 4817120
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye6 / 21105428
heart0 / 896260 
intestine4 / 23447217
kidney10 / 21177747
larynx0 / 241450 
liver5 / 20774324
lung15 / 33697444
lymph0 / 442700 
lymph node2 / 9161021
mammary gland7 / 15327145
mouth1 / 6705214
muscle1 / 1077159
nerve0 / 157680 
ovary4 / 10205139
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta6 / 28082521
prostate4 / 18934521
salivary gland1 / 2015549
skin3 / 21057414
spleen1 / 5395218
stomach9 / 9661993
testis1 / 3304423
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus9 / 23287838
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204070_at
Cell line Expression level Expression bar
721_B_lymphoblasts49.4
Adipocyte32.45
AdrenalCortex32.7
Adrenalgland25.3
Amygdala19.1
Appendix34.25
AtrioventricularNode28.85
BDCA4+_DentriticCells113.15
Bonemarrow44.45
BronchialEpithelialCells25.45
CD105+_Endothelial45.4
CD14+_Monocytes398.6
CD19+_BCells(neg._sel.)330.5
CD33+_Myeloid96.05
CD34+74.95
CD4+_Tcells955
CD56+_NKCells1598.9
CD71+_EarlyErythroid25.45
CD8+_Tcells1090.15
CardiacMyocytes23.05
Caudatenucleus55.45
Cerebellum21.35
CerebellumPeduncles31.25
CiliaryGanglion52.05
CingulateCortex27.6
Colorectaladenocarcinoma11.45
DorsalRootGanglion34.4
FetalThyroid57.75
Fetalbrain25.45
Fetalliver19.85
Fetallung45
GlobusPallidus23.8
Heart122.1
Hypothalamus76.05
Kidney57.4
Leukemia_chronicMyelogenousK-56223.9
Leukemia_promyelocytic-HL-60183.75
Leukemialymphoblastic(MOLT-4)88.45
Liver152.5
Lung413.6
Lymphnode269.75
Lymphoma_burkitts(Daudi)56.35
Lymphoma_burkitts(Raji)660.15
MedullaOblongata20.9
OccipitalLobe19.45
OlfactoryBulb98.7
Ovary38.75
Pancreas20.15
PancreaticIslet78.65
ParietalLobe32.35
Pituitary53.9
Placenta41.15
Pons30.05
PrefrontalCortex68.15
Prostate53.65
Salivarygland259.05
SkeletalMuscle36
Skin22.15
SmoothMuscle32.6
Spinalcord74.8
SubthalamicNucleus24.8
SuperiorCervicalGanglion31.55
TemporalLobe23.8
Testis20.4
TestisGermCell16.25
TestisIntersitial10.55
TestisLeydigCell18.35
TestisSeminiferousTubule25.6
Thalamus39.85
Thymus291
Thyroid68.35
Tongue23.45
Tonsil88.85
Trachea207.55
TrigeminalGanglion36.65
Uterus43.9
UterusCorpus29.2
WholeBlood673.45
Wholebrain26.75
colon48.8
pineal_day36.62
pineal_night31.92
retina181.9
small_intestine157.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_16479_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.46 ± 0.35
Basal Forebrain6.85 ± 0.33
Basal Part of Pons5.87 ± 0.51
Cerebellar Cortex5.68 ± 0.25
Cerebellar Nuclei5.77 ± 0.82
Claustrum5.66 ± 0.81
Epithalamus7.81 ± 0.35
Frontal Lobe6.19 ± 0.66
Globus Pallidus8.04 ± 0.29
Hypothalamus6.83 ± 0.71
Insula6.18 ± 0.54
Limbic Lobe6 ± 0.8
Mesencephalon6.54 ± 0.56
Myelencephalon6.47 ± 0.5
Occipital Lobe6 ± 0.52
Parietal Lobe6.16 ± 0.49
Pontine Tegmentum6.26 ± 0.55
Striatum6.84 ± 0.52
Subthalamus5.98 ± 0.35
Temporal Lobe6.17 ± 0.48
Thalamus6.49 ± 0.44
White Matter8.47 ± 0.55
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved