AutismKB 2.0

Annotation Detail for RBP1


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Basic Information Top
Gene Symbol:RBP1 ( CRABP-I,CRBP,CRBP1,CRBPI,RBPC )
Gene Full Name: retinol binding protein 1, cellular
Band: 3q23
Quick LinksEntrez ID:5947; OMIM: 180260; Uniprot ID:RET1_HUMAN; ENSEMBL ID: ENSG00000114115,ENSG00000248478; HGNC ID: 9919
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body7 / 7076198
blastocyst0 / 623190 
fetus32 / 56401256
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult91 / 193912146
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor2 / 17290115
gastrointestinal tumor0 / 1193690 
germ cell tumor14 / 26384553
glioma10 / 10688393
head and neck tumor14 / 136302102
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor9 / 10312787
lymphoma1 / 7175513
non-neoplasia1 / 9725010
normal147 / 336030743
ovarian tumor7 / 7668291
pancreatic tumor10 / 10461695
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer0 / 1026800 
retinoblastoma2 / 4635643
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor11 / 12519187
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain35 / 110098931
cervix0 / 481710 
connective tissue10 / 14925566
ear4 / 16212246
embryonic tissue7 / 21572232
esophagus2 / 2020998
eye23 / 211054108
heart7 / 8962678
intestine3 / 23447212
kidney3 / 21177714
larynx0 / 241450 
liver2 / 2077439
lung28 / 33697483
lymph0 / 442700 
lymph node1 / 9161010
mammary gland3 / 15327119
mouth14 / 67052208
muscle2 / 10771518
nerve0 / 157680 
ovary10 / 10205197
pancreas31 / 214812144
parathyroid2 / 2053997
pharynx0 / 413280 
pituitary gland2 / 16585120
placenta8 / 28082528
prostate13 / 18934568
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach1 / 9661910
testis6 / 33044218
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus8 / 23287834
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203423_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.8
Adipocyte11.7
AdrenalCortex196.8
Adrenalgland452.05
Amygdala15.5
Appendix12.95
AtrioventricularNode9.75
BDCA4+_DentriticCells8.35
Bonemarrow8.6
BronchialEpithelialCells49.9
CD105+_Endothelial7.95
CD14+_Monocytes8.05
CD19+_BCells(neg._sel.)7.35
CD33+_Myeloid11.85
CD34+10.45
CD4+_Tcells9.6
CD56+_NKCells9.05
CD71+_EarlyErythroid9.4
CD8+_Tcells7.15
CardiacMyocytes17.55
Caudatenucleus18.25
Cerebellum14.65
CerebellumPeduncles20.95
CiliaryGanglion7.65
CingulateCortex22.7
Colorectaladenocarcinoma5818.8
DorsalRootGanglion7.05
FetalThyroid9.9
Fetalbrain19.55
Fetalliver60.95
Fetallung73
GlobusPallidus9.85
Heart25.4
Hypothalamus68.75
Kidney7.95
Leukemia_chronicMyelogenousK-5626.1
Leukemia_promyelocytic-HL-606.7
Leukemialymphoblastic(MOLT-4)9.1
Liver143.85
Lung41.25
Lymphnode11.5
Lymphoma_burkitts(Daudi)8.35
Lymphoma_burkitts(Raji)14.25
MedullaOblongata13.9
OccipitalLobe16.5
OlfactoryBulb23.8
Ovary675.35
Pancreas140.75
PancreaticIslet492.9
ParietalLobe14.15
Pituitary345
Placenta174.85
Pons13.45
PrefrontalCortex30.1
Prostate11.25
Salivarygland15.75
SkeletalMuscle12.5
Skin9.8
SmoothMuscle27.45
Spinalcord47.1
SubthalamicNucleus9.4
SuperiorCervicalGanglion11.75
TemporalLobe13.75
Testis47.1
TestisGermCell61.55
TestisIntersitial29.6
TestisLeydigCell19.05
TestisSeminiferousTubule12
Thalamus69.9
Thymus8.05
Thyroid16.4
Tongue12.55
Tonsil7.95
Trachea10.85
TrigeminalGanglion7.7
Uterus95
UterusCorpus35.75
WholeBlood7.85
Wholebrain34.65
colon12.95
pineal_day208.98
pineal_night281.96
retina1082.55
small_intestine42.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P257649
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.18 ± 0.5
Basal Forebrain8.08 ± 0.27
Basal Part of Pons7.19 ± 0.43
Cerebellar Cortex7.32 ± 0.36
Cerebellar Nuclei7.47 ± 0.62
Claustrum6.37 ± 0.53
Epithalamus8.97 ± 0.57
Frontal Lobe7.89 ± 0.52
Globus Pallidus8.76 ± 0.35
Hypothalamus7.9 ± 0.48
Insula7.64 ± 0.3
Limbic Lobe7.34 ± 0.47
Mesencephalon7.71 ± 0.59
Myelencephalon7.78 ± 0.66
Occipital Lobe7.51 ± 0.47
Parietal Lobe7.71 ± 0.46
Pontine Tegmentum7.85 ± 0.4
Striatum8.64 ± 0.53
Subthalamus7.38 ± 0.6
Temporal Lobe7.31 ± 0.44
Thalamus8.18 ± 0.46
White Matter8.22 ± 0.59
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rbp1CBCerebellum6.75
13.89
Rbp1CTXCerebral cortex3.58
5.49
Rbp1HIPHippocampal region2.4
4.4
Rbp1HPFHippocampal formation2.59
4.06
Rbp1HYHypothalamus1.91
2.82
Rbp1LSXLateral septal complex6.12
5.74
Rbp1MBMidbrain4.39
10.5
Rbp1MYMedulla11.83
19.38
Rbp1OLFOlfactory bulb5.67
5.77
Rbp1PPons12.48
24.21
Rbp1PALPallidum1.47
1.57
Rbp1RHPRetrohippocampal region3.22
3.68
Rbp1sAMYStriatum-like amygdalar nuclei0.77
0.59
Rbp1STRStriatum5.25
5.01
Rbp1STRdStriatum dorsal region0.93
1
Rbp1STRvStriatum ventral region17.87
15.8
Rbp1THThalamus5.55
8.97
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00395340 16 168 183 GWTQWIEGDELHLEMR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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