AutismKB 2.0

Annotation Detail for OPN1LW


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Basic Information Top
Gene Symbol:OPN1LW ( CBBM,CBP,COD5,RCP,ROP )
Gene Full Name: opsin 1 (cone pigments), long-wave-sensitive
Band: Xq28
Quick LinksEntrez ID:5956; OMIM: 300822; Uniprot ID:OPSR_HUMAN; ENSEMBL ID: ENSG00000102076; HGNC ID: 9936
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult9 / 19391214
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal10 / 33603072
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain1 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye9 / 21105442
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221327_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.1
Adipocyte4.05
AdrenalCortex4.4
Adrenalgland3.45
Amygdala4.3
Appendix4.1
AtrioventricularNode3.25
BDCA4+_DentriticCells4.8
Bonemarrow4.05
BronchialEpithelialCells4.05
CD105+_Endothelial4.15
CD14+_Monocytes4.5
CD19+_BCells(neg._sel.)4.45
CD33+_Myeloid5.3
CD34+5.5
CD4+_Tcells4.55
CD56+_NKCells5
CD71+_EarlyErythroid3.9
CD8+_Tcells3.95
CardiacMyocytes5.05
Caudatenucleus3.7
Cerebellum3.3
CerebellumPeduncles4.65
CiliaryGanglion3
CingulateCortex4.2
Colorectaladenocarcinoma4.1
DorsalRootGanglion3.2
FetalThyroid3.95
Fetalbrain4.1
Fetalliver3.55
Fetallung3.35
GlobusPallidus3.1
Heart5.15
Hypothalamus4.4
Kidney3.35
Leukemia_chronicMyelogenousK-5623.7
Leukemia_promyelocytic-HL-603.6
Leukemialymphoblastic(MOLT-4)3.3
Liver5.35
Lung4.5
Lymphnode3.6
Lymphoma_burkitts(Daudi)5.4
Lymphoma_burkitts(Raji)6.2
MedullaOblongata3.7
OccipitalLobe3.7
OlfactoryBulb3.2
Ovary2.75
Pancreas3.3
PancreaticIslet4.35
ParietalLobe4.4
Pituitary4.8
Placenta4.3
Pons4
PrefrontalCortex5
Prostate4.75
Salivarygland3.4
SkeletalMuscle4.75
Skin3.9
SmoothMuscle4.6
Spinalcord4.4
SubthalamicNucleus3.75
SuperiorCervicalGanglion4.7
TemporalLobe3.75
Testis3.55
TestisGermCell3.45
TestisIntersitial3.4
TestisLeydigCell4.2
TestisSeminiferousTubule3.55
Thalamus4.2
Thymus3.2
Thyroid5.1
Tongue4.05
Tonsil4
Trachea3.4
TrigeminalGanglion4.1
Uterus3.4
UterusCorpus3.7
WholeBlood4.45
Wholebrain3.45
colon4.15
pineal_day5.12
pineal_night5.02
retina31.65
small_intestine3.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_8644_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.94 ± 1.06
Basal Forebrain2.52 ± 0.15
Basal Part of Pons2.19 ± 0.44
Cerebellar Cortex2.52 ± 0.74
Cerebellar Nuclei2.84 ± 0.78
Claustrum3.22 ± 0.95
Epithalamus2.6 ± 0.9
Frontal Lobe2.51 ± 0.76
Globus Pallidus2.93 ± 0.93
Hypothalamus2.3 ± 0.64
Insula2.26 ± 0.62
Limbic Lobe2.61 ± 0.72
Mesencephalon2.75 ± 0.87
Myelencephalon2.58 ± 0.72
Occipital Lobe2.97 ± 0.83
Parietal Lobe2.54 ± 0.8
Pontine Tegmentum2.62 ± 0.75
Striatum2.71 ± 0.77
Subthalamus2.87 ± 0.31
Temporal Lobe2.5 ± 0.69
Thalamus2.45 ± 0.7
White Matter2.81 ± 0.12
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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