AutismKB 2.0

Annotation Detail for REL


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Basic Information Top
Gene Symbol:REL ( C-Rel )
Gene Full Name: v-rel reticuloendotheliosis viral oncogene homolog (avian)
Band: 2p16.1
Quick LinksEntrez ID:5966; OMIM: 164910; Uniprot ID:REL_HUMAN; ENSEMBL ID: ENSG00000162924; HGNC ID: 9954
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus2 / 5640123
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult15 / 19391217
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia5 / 9584252
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma2 / 7175527
non-neoplasia0 / 972500 
normal19 / 33603075
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood6 / 12347848
bone0 / 716550 
bone marrow0 / 488010 
brain2 / 11009891
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine5 / 23447221
kidney2 / 2117779
larynx1 / 2414541
liver2 / 2077439
lung3 / 3369748
lymph2 / 4427045
lymph node8 / 9161087
mammary gland2 / 15327113
mouth1 / 6705214
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206036_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts11.15
Adipocyte7.45
AdrenalCortex9.55
Adrenalgland7.1
Amygdala7.4
Appendix15.45
AtrioventricularNode7.05
BDCA4+_DentriticCells25
Bonemarrow8.75
BronchialEpithelialCells7.2
CD105+_Endothelial7.6
CD14+_Monocytes38.95
CD19+_BCells(neg._sel.)105.1
CD33+_Myeloid96.05
CD34+11.75
CD4+_Tcells9.55
CD56+_NKCells25.55
CD71+_EarlyErythroid7.3
CD8+_Tcells15.35
CardiacMyocytes9.9
Caudatenucleus6.85
Cerebellum6.45
CerebellumPeduncles9.85
CiliaryGanglion6.3
CingulateCortex8.2
Colorectaladenocarcinoma7.7
DorsalRootGanglion7.2
FetalThyroid7.55
Fetalbrain7.3
Fetalliver6.95
Fetallung5.75
GlobusPallidus6.1
Heart11.95
Hypothalamus7.9
Kidney8.2
Leukemia_chronicMyelogenousK-5626.8
Leukemia_promyelocytic-HL-607.95
Leukemialymphoblastic(MOLT-4)5.75
Liver12.3
Lung8.3
Lymphnode9.85
Lymphoma_burkitts(Daudi)22.45
Lymphoma_burkitts(Raji)12.2
MedullaOblongata6.8
OccipitalLobe6.75
OlfactoryBulb5.9
Ovary5.9
Pancreas6.45
PancreaticIslet8.35
ParietalLobe9
Pituitary9
Placenta7.25
Pons8.3
PrefrontalCortex8.9
Prostate9
Salivarygland6.6
SkeletalMuscle12.35
Skin6.85
SmoothMuscle8.55
Spinalcord8.15
SubthalamicNucleus7.25
SuperiorCervicalGanglion13.45
TemporalLobe7.35
Testis6.55
TestisGermCell6.15
TestisIntersitial6.65
TestisLeydigCell7.8
TestisSeminiferousTubule6.6
Thalamus8
Thymus5.85
Thyroid8.8
Tongue8
Tonsil44.7
Trachea6.55
TrigeminalGanglion10.05
Uterus5.95
UterusCorpus8
WholeBlood9.1
Wholebrain5.85
colon7.8
pineal_day9.34
pineal_night11.88
retina9.425
small_intestine7.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P56938
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.01 ± 0.61
Basal Forebrain4 ± 0.76
Basal Part of Pons4.05 ± 0.45
Cerebellar Cortex4.61 ± 0.29
Cerebellar Nuclei4.25 ± 0.4
Claustrum4.03 ± 0.71
Epithalamus4.12 ± 0.41
Frontal Lobe4 ± 0.51
Globus Pallidus3.64 ± 0.31
Hypothalamus3.74 ± 0.65
Insula4.25 ± 0.39
Limbic Lobe3.93 ± 0.5
Mesencephalon4.13 ± 0.5
Myelencephalon3.98 ± 0.57
Occipital Lobe4.36 ± 0.43
Parietal Lobe3.97 ± 0.52
Pontine Tegmentum3.93 ± 0.58
Striatum3.73 ± 0.68
Subthalamus3.77 ± 0.3
Temporal Lobe3.97 ± 0.56
Thalamus4.09 ± 0.55
White Matter3.81 ± 0.3
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
RelCBCerebellum8.48
9.98
RelCTXCerebral cortex6.58
4.46
RelHIPHippocampal region4.27
3.93
RelHPFHippocampal formation5.31
4.31
RelHYHypothalamus1.1
0.83
RelLSXLateral septal complex1.59
1.17
RelMBMidbrain4.8
4.4
RelMYMedulla7.98
9.09
RelOLFOlfactory bulb9.49
6.95
RelPPons5.36
6.1
RelPALPallidum0.66
0.52
RelRHPRetrohippocampal region7.48
5.16
RelsAMYStriatum-like amygdalar nuclei0.32
0.36
RelSTRStriatum1.26
0.93
RelSTRdStriatum dorsal region1.21
0.89
RelSTRvStriatum ventral region1.81
1.2
RelTHThalamus6.69
6.94
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00035572 30 150 179 LCFQVFLPDEHGNLTTALPPVVSNPIYDNR Peptide Atlas
REL_HUMAN_2 16 2 17 ASGAYNPYIEIIEQPR PRIDE
REL_HUMAN_265 14 265 278 RPSDQEVSESMDFR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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