Annotation Detail for RFC3
Basic Information Top
| Gene Symbol: | RFC3 ( MGC5276,RFC38 ) |
|---|---|
| Gene Full Name: | replication factor C (activator 1) 3, 38kDa |
| Band: | 13q13.2 |
| Quick Links | Entrez ID:5983; OMIM: 600405; Uniprot ID:RFC3_HUMAN; ENSEMBL ID: ENSG00000133119; HGNC ID: 9971 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.115474
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 7 / 62319 | 112 | |
| fetus | 33 / 564012 | 58 | |
| neonate | 6 / 31097 | 192 | |
| infant | 5 / 23620 | 211 |  |
| juvenile | 16 / 55556 | 287 | |
| adult | 89 / 1939121 | 45 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 7 / 94178 | 74 | |
| cervical tumor | 6 / 34366 | 174 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 60 / 263845 | 227 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 8 / 136302 | 58 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 8 / 96359 | 83 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 9 / 71755 | 125 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 170 / 3360307 | 50 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 24 / 125680 | 190 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 6 / 46356 | 129 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 3 / 29757 | 100 | |
| blood | 8 / 123478 | 64 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 56 / 1100989 | 50 | |
| cervix | 6 / 48171 | 124 | |
| connective tissue | 6 / 149255 | 40 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 15 / 215722 | 69 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 8 / 211054 | 37 | |
| heart | 4 / 89626 | 44 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 0 / 24145 | 0 | |
| liver | 19 / 207743 | 91 | |
| lung | 7 / 336974 | 20 | |
| lymph | 6 / 44270 | 135 | |
| lymph node | 7 / 91610 | 76 | |
| mammary gland | 8 / 153271 | 52 | |
| mouth | 8 / 67052 | 119 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 23 / 280825 | 81 | |
| prostate | 10 / 189345 | 52 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 9 / 210574 | 42 | |
| spleen | 9 / 53952 | 166 | |
| stomach | 2 / 96619 | 20 | |
| testis | 53 / 330442 | 160 | |
| thymus | 7 / 81131 | 86 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 8 / 51780 | 154 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 204128_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 112.9 | |
| Adipocyte | 4.5 | |
| AdrenalCortex | 5 | |
| Adrenalgland | 3.95 | |
| Amygdala | 4.8 | |
| Appendix | 6.75 | |
| AtrioventricularNode | 3.75 | |
| BDCA4+_DentriticCells | 6.05 | |
| Bonemarrow | 4.65 | |
| BronchialEpithelialCells | 4.6 | |
| CD105+_Endothelial | 28.45 | |
| CD14+_Monocytes | 4.95 | |
| CD19+_BCells(neg._sel.) | 4.85 | |
| CD33+_Myeloid | 6.2 | |
| CD34+ | 25.95 | |
| CD4+_Tcells | 5 | |
| CD56+_NKCells | 5.7 | |
| CD71+_EarlyErythroid | 43.65 | |
| CD8+_Tcells | 4.4 | |
| CardiacMyocytes | 6.4 | |
| Caudatenucleus | 4.15 | |
| Cerebellum | 3.75 | |
| CerebellumPeduncles | 5.35 | |
| CiliaryGanglion | 3.4 | |
| CingulateCortex | 4.75 | |
| Colorectaladenocarcinoma | 5.3 | |
| DorsalRootGanglion | 3.65 | |
| FetalThyroid | 4.45 | |
| Fetalbrain | 4.55 | |
| Fetalliver | 4.4 | |
| Fetallung | 3.7 | |
| GlobusPallidus | 3.45 | |
| Heart | 6.2 | |
| Hypothalamus | 4.9 | |
| Kidney | 3.85 | |
| Leukemia_chronicMyelogenousK-562 | 4.5 | |
| Leukemia_promyelocytic-HL-60 | 29.1 | |
| Leukemialymphoblastic(MOLT-4) | 55.3 | |
| Liver | 6.3 | |
| Lung | 4.95 | |
| Lymphnode | 3.95 | |
| Lymphoma_burkitts(Daudi) | 70.9 | |
| Lymphoma_burkitts(Raji) | 6.65 | |
| MedullaOblongata | 4.25 | |
| OccipitalLobe | 4.15 | |
| OlfactoryBulb | 3.6 | |
| Ovary | 3.15 | |
| Pancreas | 3.75 | |
| PancreaticIslet | 4.95 | |
| ParietalLobe | 5 | |
| Pituitary | 5.35 | |
| Placenta | 4.65 | |
| Pons | 4.45 | |
| PrefrontalCortex | 5.7 | |
| Prostate | 5.2 | |
| Salivarygland | 3.75 | |
| SkeletalMuscle | 5.65 | |
| Skin | 3.8 | |
| SmoothMuscle | 5.15 | |
| Spinalcord | 4.95 | |
| SubthalamicNucleus | 4.3 | |
| SuperiorCervicalGanglion | 6.5 | |
| TemporalLobe | 4.3 | |
| Testis | 4 | |
| TestisGermCell | 3.9 | |
| TestisIntersitial | 4.1 | |
| TestisLeydigCell | 4.65 | |
| TestisSeminiferousTubule | 3.95 | |
| Thalamus | 4.7 | |
| Thymus | 3.8 | |
| Thyroid | 5.65 | |
| Tongue | 4.65 | |
| Tonsil | 4.55 | |
| Trachea | 3.9 | |
| TrigeminalGanglion | 4.8 | |
| Uterus | 3.7 | |
| UterusCorpus | 4.25 | |
| WholeBlood | 4.95 | |
| Wholebrain | 3.85 | |
| colon | 4.7 | |
| pineal_day | 5.66 | |
| pineal_night | 5.5 | |
| retina | 5.625 | |
| small_intestine | 4.95 | |
- Probe name: A_23_P14193
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.89 ± 0.43 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.17 ± 0.34 | |
| Basal Part of Pons | 5.56 ± 0.25 | |
| Cerebellar Cortex | 5.77 ± 0.23 | |
| Cerebellar Nuclei | 5.38 ± 0.34 | |
| Claustrum | 5.88 ± 0.47 | |
| Epithalamus | 5.35 ± 0.42 | |
| Frontal Lobe | 5.3 ± 0.55 | |
| Globus Pallidus | 4.33 ± 0.32 | |
| Hypothalamus | 5.67 ± 0.47 | |
| Insula | 5.53 ± 0.48 | |
| Limbic Lobe | 5.44 ± 0.51 | |
| Mesencephalon | 5.17 ± 0.61 | |
| Myelencephalon | 5.17 ± 0.61 | |
| Occipital Lobe | 5.08 ± 0.38 | |
| Parietal Lobe | 5 ± 0.49 | |
| Pontine Tegmentum | 5.17 ± 0.57 | |
| Striatum | 4.5 ± 0.43 | |
| Subthalamus | 4.84 ± 0.27 | |
| Temporal Lobe | 5.26 ± 0.41 | |
| Thalamus | 4.64 ± 0.53 | |
| White Matter | 5.03 ± 0.16 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rfc3 | CB | Cerebellum | 8.78 | |
| 10.59 | | |||
| Rfc3 | CTX | Cerebral cortex | 23.05 | |
| 17.49 | | |||
| Rfc3 | HIP | Hippocampal region | 14.65 | |
| 14.01 | | |||
| Rfc3 | HPF | Hippocampal formation | 16.92 | |
| 14.81 | | |||
| Rfc3 | HY | Hypothalamus | 14.92 | |
| 11.95 | | |||
| Rfc3 | LSX | Lateral septal complex | 3.76 | |
| 3.61 | | |||
| Rfc3 | MB | Midbrain | 6.42 | |
| 7.04 | | |||
| Rfc3 | MY | Medulla | 9.94 | |
| 14.92 | | |||
| Rfc3 | OLF | Olfactory bulb | 40.41 | |
| 32.25 | | |||
| Rfc3 | P | Pons | 15.96 | |
| 20.01 | | |||
| Rfc3 | PAL | Pallidum | 11.02 | |
| 9.99 | | |||
| Rfc3 | RHP | Retrohippocampal region | 22.28 | |
| 16.98 | | |||
| Rfc3 | sAMY | Striatum-like amygdalar nuclei | 17.68 | |
| 13.23 | | |||
| Rfc3 | STR | Striatum | 9.37 | |
| 7.41 | | |||
| Rfc3 | STRd | Striatum dorsal region | 5.97 | |
| 4.93 | | |||
| Rfc3 | STRv | Striatum ventral region | 18.55 | |
| 13.23 | | |||
| Rfc3 | TH | Thalamus | 9.63 | |
| 8.08 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00005887 | 22 | 28 | 49 | NLVQCGDFPHLLVYGPSGAGKK | Peptide Atlas |