AutismKB 2.0

Annotation Detail for FAM3A


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Basic Information Top
Gene Symbol:FAM3A ( 2.19,DLD,DXS560S,XAP-7 )
Gene Full Name: family with sequence similarity 3, member A
Band: Xq28
Quick LinksEntrez ID:60343; OMIM: 300492; Uniprot ID:FAM3A_HUMAN; ENSEMBL ID: ENSG00000071889; HGNC ID: 13749
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst7 / 62319112
fetus20 / 56401235
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult133 / 193912168
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor6 / 9417863
cervical tumor2 / 3436658
chondrosarcoma4 / 8282348
colorectal tumor5 / 11424643
esophageal tumor0 / 172900 
gastrointestinal tumor7 / 11936958
germ cell tumor8 / 26384530
glioma13 / 106883121
head and neck tumor2 / 13630214
kidney tumor1 / 6895914
leukemia6 / 9584262
liver tumor2 / 9635920
lung tumor5 / 10312748
lymphoma2 / 7175527
non-neoplasia5 / 9725051
normal178 / 336030752
ovarian tumor5 / 7668265
pancreatic tumor31 / 104616296
primitive neuroectodermal tumor of the CNS14 / 125680111
prostate cancer5 / 10268048
retinoblastoma2 / 4635643
skin tumor13 / 124949104
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland3 / 3319790
ascites0 / 400150 
bladder0 / 297570 
blood5 / 12347840
bone2 / 7165527
bone marrow0 / 488010 
brain78 / 110098970
cervix10 / 48171207
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue13 / 21572260
esophagus0 / 202090 
eye17 / 21105480
heart4 / 8962644
intestine17 / 23447272
kidney5 / 21177723
larynx2 / 2414582
liver5 / 20774324
lung17 / 33697450
lymph1 / 4427022
lymph node4 / 9161043
mammary gland7 / 15327145
mouth0 / 670520 
muscle5 / 10771546
nerve0 / 157680 
ovary10 / 10205197
pancreas31 / 214812144
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta25 / 28082589
prostate8 / 18934542
salivary gland1 / 2015549
skin16 / 21057475
spleen3 / 5395255
stomach7 / 9661972
testis2 / 3304426
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus9 / 23287838
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 38043_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.65
Adipocyte6.4
AdrenalCortex6.65
Adrenalgland5.45
Amygdala6.95
Appendix6.25
AtrioventricularNode4.6
BDCA4+_DentriticCells11.65
Bonemarrow6.2
BronchialEpithelialCells6.45
CD105+_Endothelial8.75
CD14+_Monocytes6.9
CD19+_BCells(neg._sel.)7.4
CD33+_Myeloid7.95
CD34+8.35
CD4+_Tcells7.1
CD56+_NKCells8.05
CD71+_EarlyErythroid5.85
CD8+_Tcells7.7
CardiacMyocytes7.8
Caudatenucleus5.9
Cerebellum5.25
CerebellumPeduncles7.4
CiliaryGanglion4.2
CingulateCortex7.85
Colorectaladenocarcinoma8.5
DorsalRootGanglion4.65
FetalThyroid9.2
Fetalbrain6.35
Fetalliver5.45
Fetallung5.45
GlobusPallidus4.55
Heart13.6
Hypothalamus7.2
Kidney5.3
Leukemia_chronicMyelogenousK-5625.8
Leukemia_promyelocytic-HL-605.6
Leukemialymphoblastic(MOLT-4)5.05
Liver11.75
Lung12.1
Lymphnode5.35
Lymphoma_burkitts(Daudi)7.85
Lymphoma_burkitts(Raji)8.8
MedullaOblongata5.95
OccipitalLobe5.75
OlfactoryBulb5.05
Ovary4.15
Pancreas15.05
PancreaticIslet7.05
ParietalLobe6.65
Pituitary7.65
Placenta7.9
Pons6
PrefrontalCortex12.9
Prostate11.8
Salivarygland5.05
SkeletalMuscle8.65
Skin4.7
SmoothMuscle7.05
Spinalcord10.35
SubthalamicNucleus5.65
SuperiorCervicalGanglion6.95
TemporalLobe5.75
Testis5.6
TestisGermCell5
TestisIntersitial5.25
TestisLeydigCell6.15
TestisSeminiferousTubule5.45
Thalamus10.35
Thymus5.1
Thyroid17.45
Tongue6
Tonsil6.1
Trachea5.3
TrigeminalGanglion6
Uterus5.25
UterusCorpus6.1
WholeBlood7.05
Wholebrain11.15
colon6.4
pineal_day22.46
pineal_night22.22
retina8.95
small_intestine6.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P340116
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.76 ± 0.56
Basal Forebrain3.63 ± 0.53
Basal Part of Pons3.68 ± 0.53
Cerebellar Cortex3.57 ± 0.55
Cerebellar Nuclei3.86 ± 0.56
Claustrum3.39 ± 0.7
Epithalamus3.42 ± 0.64
Frontal Lobe3.67 ± 0.54
Globus Pallidus4.05 ± 0.66
Hypothalamus3.44 ± 0.38
Insula3.36 ± 0.65
Limbic Lobe3.61 ± 0.53
Mesencephalon3.61 ± 0.6
Myelencephalon3.58 ± 0.54
Occipital Lobe3.41 ± 0.59
Parietal Lobe3.59 ± 0.46
Pontine Tegmentum3.63 ± 0.55
Striatum3.51 ± 0.63
Subthalamus3.44 ± 0.4
Temporal Lobe3.63 ± 0.41
Thalamus3.66 ± 0.49
White Matter4.31 ± 0.27
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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