AutismKB 2.0

Annotation Detail for APOBEC3G


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Basic Information Top
Gene Symbol:APOBEC3G ( ARCD,ARP-9,ARP9,CEM-15,CEM15,FLJ12740,bK150C2.7,dJ494G10.1 )
Gene Full Name: apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G
Band: 22q13.1
Quick LinksEntrez ID:60489; OMIM: 607113; Uniprot ID:ABC3G_HUMAN; ENSEMBL ID: ENSG00000128394; HGNC ID: 17357
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus5 / 5640128
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult54 / 193912127
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma2 / 17475114
breast (mammary gland) tumor1 / 9417810
cervical tumor1 / 3436629
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor7 / 26384526
glioma4 / 10688337
head and neck tumor3 / 13630222
kidney tumor4 / 6895958
leukemia10 / 95842104
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma8 / 71755111
non-neoplasia2 / 9725020
normal87 / 336030725
ovarian tumor2 / 7668226
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS8 / 12568063
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor6 / 12494948
soft tissue/muscle tissue tumor11 / 12519187
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood18 / 123478145
bone2 / 7165527
bone marrow4 / 4880181
brain8 / 11009897
cervix1 / 4817120
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye3 / 21105414
heart1 / 8962611
intestine2 / 2344728
kidney6 / 21177728
larynx0 / 241450 
liver3 / 20774314
lung1 / 3369742
lymph5 / 44270112
lymph node10 / 91610109
mammary gland4 / 15327126
mouth3 / 6705244
muscle3 / 10771527
nerve0 / 157680 
ovary3 / 10205129
pancreas7 / 21481232
parathyroid0 / 205390 
pharynx3 / 4132872
pituitary gland1 / 1658560
placenta6 / 28082521
prostate4 / 18934521
salivary gland0 / 201550 
skin7 / 21057433
spleen4 / 5395274
stomach3 / 9661931
testis15 / 33044245
thymus2 / 8113124
thyroid0 / 474730 
tonsil5 / 16999294
trachea2 / 5241338
umbilical cord0 / 136800 
uterus17 / 23287872
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204205_at
Cell line Expression level Expression bar
721_B_lymphoblasts534.75
Adipocyte16.7
AdrenalCortex35.05
Adrenalgland22.2
Amygdala16.85
Appendix24.5
AtrioventricularNode13.8
BDCA4+_DentriticCells305.2
Bonemarrow46.6
BronchialEpithelialCells43.6
CD105+_Endothelial17.95
CD14+_Monocytes291.45
CD19+_BCells(neg._sel.)461.75
CD33+_Myeloid60.4
CD34+24.05
CD4+_Tcells303.75
CD56+_NKCells1552.05
CD71+_EarlyErythroid21.7
CD8+_Tcells502.7
CardiacMyocytes26.85
Caudatenucleus15.8
Cerebellum16.75
CerebellumPeduncles26.05
CiliaryGanglion36.25
CingulateCortex18.7
Colorectaladenocarcinoma1797.15
DorsalRootGanglion14.5
FetalThyroid20
Fetalbrain15.4
Fetalliver15.65
Fetallung13.85
GlobusPallidus13.35
Heart37.5
Hypothalamus23.4
Kidney19.65
Leukemia_chronicMyelogenousK-56220.8
Leukemia_promyelocytic-HL-60159.55
Leukemialymphoblastic(MOLT-4)21.8
Liver38.4
Lung33
Lymphnode107.75
Lymphoma_burkitts(Daudi)113.95
Lymphoma_burkitts(Raji)402.3
MedullaOblongata15.4
OccipitalLobe14.05
OlfactoryBulb11.85
Ovary16.65
Pancreas20.25
PancreaticIslet22.4
ParietalLobe17.6
Pituitary23.8
Placenta15.95
Pons20.8
PrefrontalCortex18.65
Prostate20.3
Salivarygland17.65
SkeletalMuscle51.3
Skin17.55
SmoothMuscle20.6
Spinalcord31.65
SubthalamicNucleus16.3
SuperiorCervicalGanglion47.35
TemporalLobe18.45
Testis123.8
TestisGermCell134.65
TestisIntersitial25.35
TestisLeydigCell27.05
TestisSeminiferousTubule19.85
Thalamus17.15
Thymus89.55
Thyroid53.4
Tongue24.75
Tonsil117.4
Trachea18.15
TrigeminalGanglion32.45
Uterus20.4
UterusCorpus26.35
WholeBlood388.15
Wholebrain13.2
colon51.85
pineal_day16.16
pineal_night17.1
retina21.5
small_intestine59.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1374_PI416573500
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.34 ± 0.92
Basal Forebrain2.86 ± 0.79
Basal Part of Pons2.28 ± 0.5
Cerebellar Cortex2.48 ± 0.61
Cerebellar Nuclei2.89 ± 0.51
Claustrum2.86 ± 1.12
Epithalamus4.11 ± 0.47
Frontal Lobe2.78 ± 0.71
Globus Pallidus4.49 ± 0.4
Hypothalamus2.79 ± 1.06
Insula2.86 ± 0.5
Limbic Lobe2.68 ± 0.71
Mesencephalon3.01 ± 0.72
Myelencephalon2.86 ± 0.76
Occipital Lobe2.59 ± 0.78
Parietal Lobe2.75 ± 0.8
Pontine Tegmentum2.9 ± 0.65
Striatum3.3 ± 0.6
Subthalamus3.01 ± 0.95
Temporal Lobe2.8 ± 0.73
Thalamus2.86 ± 0.55
White Matter3.21 ± 0.87
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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