AutismKB 2.0

Annotation Detail for CCDC90B


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Basic Information Top
Gene Symbol:CCDC90B ( MDS011,MDS025,MGC104239 )
Gene Full Name: coiled-coil domain containing 90B
Band: 11q14.1
Quick LinksEntrez ID:60492; OMIM: NA; Uniprot ID:CC90B_HUMAN; ENSEMBL ID: ENSG00000137500; HGNC ID: 28108
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst2 / 6231932
fetus11 / 56401219
neonate2 / 3109764
infant1 / 2362042
juvenile3 / 5555653
adult53 / 193912127
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma15 / 17475858
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor4 / 11424635
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor11 / 26384541
glioma6 / 10688356
head and neck tumor0 / 1363020 
kidney tumor12 / 68959174
leukemia10 / 95842104
liver tumor5 / 9635951
lung tumor1 / 1031279
lymphoma2 / 7175527
non-neoplasia2 / 9725020
normal158 / 336030747
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor17 / 124949136
soft tissue/muscle tissue tumor8 / 12519163
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland3 / 3319790
ascites1 / 4001524
bladder15 / 29757504
blood7 / 12347856
bone3 / 7165541
bone marrow7 / 48801143
brain57 / 110098951
cervix0 / 481710 
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue14 / 21572264
esophagus0 / 202090 
eye0 / 2110540 
heart1 / 8962611
intestine9 / 23447238
kidney14 / 21177766
larynx0 / 241450 
liver8 / 20774338
lung7 / 33697420
lymph1 / 4427022
lymph node5 / 9161054
mammary gland7 / 15327145
mouth0 / 670520 
muscle5 / 10771546
nerve1 / 1576863
ovary0 / 1020510 
pancreas12 / 21481255
parathyroid0 / 205390 
pharynx6 / 41328145
pituitary gland1 / 1658560
placenta5 / 28082517
prostate7 / 18934536
salivary gland10 / 20155496
skin18 / 21057485
spleen1 / 5395218
stomach2 / 9661920
testis38 / 330442114
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord2 / 13680146
uterus10 / 23287842
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218288_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts222.2
Adipocyte25.1
AdrenalCortex18.5
Adrenalgland18.5
Amygdala58.7
Appendix18.5
AtrioventricularNode13.65
BDCA4+_DentriticCells132.8
Bonemarrow8.7
BronchialEpithelialCells102.7
CD105+_Endothelial158.45
CD14+_Monocytes100.55
CD19+_BCells(neg._sel.)285.45
CD33+_Myeloid110.75
CD34+238
CD4+_Tcells80.4
CD56+_NKCells186.6
CD71+_EarlyErythroid46.15
CD8+_Tcells87.45
CardiacMyocytes67.5
Caudatenucleus29.45
Cerebellum7
CerebellumPeduncles11.8
CiliaryGanglion9.85
CingulateCortex18
Colorectaladenocarcinoma56.65
DorsalRootGanglion15.65
FetalThyroid12.6
Fetalbrain175.9
Fetalliver58.9
Fetallung21.25
GlobusPallidus12.7
Heart9.7
Hypothalamus117.95
Kidney6.6
Leukemia_chronicMyelogenousK-56277.4
Leukemia_promyelocytic-HL-6068.4
Leukemialymphoblastic(MOLT-4)41.45
Liver15.15
Lung9.95
Lymphnode32.7
Lymphoma_burkitts(Daudi)157.7
Lymphoma_burkitts(Raji)79.3
MedullaOblongata21.4
OccipitalLobe23.4
OlfactoryBulb47.3
Ovary6.35
Pancreas20.75
PancreaticIslet31.2
ParietalLobe14.95
Pituitary61
Placenta12.75
Pons19.1
PrefrontalCortex45.3
Prostate29.35
Salivarygland20
SkeletalMuscle8.35
Skin18.1
SmoothMuscle69.2
Spinalcord155.95
SubthalamicNucleus10.1
SuperiorCervicalGanglion13.2
TemporalLobe14.35
Testis98.1
TestisGermCell177.6
TestisIntersitial184
TestisLeydigCell79.2
TestisSeminiferousTubule141
Thalamus42.15
Thymus9.8
Thyroid135.2
Tongue8.25
Tonsil16.75
Trachea17.55
TrigeminalGanglion12.45
Uterus47.95
UterusCorpus9.65
WholeBlood42.35
Wholebrain34.7
colon21.9
pineal_day119.56
pineal_night111.1
retina53.85
small_intestine23
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P133085
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.34 ± 0.25
Basal Forebrain8.39 ± 0.16
Basal Part of Pons8.14 ± 0.16
Cerebellar Cortex7.93 ± 0.15
Cerebellar Nuclei8.49 ± 0.52
Claustrum8.2 ± 0.26
Epithalamus8.33 ± 0.35
Frontal Lobe8.23 ± 0.3
Globus Pallidus9.2 ± 0.18
Hypothalamus8.66 ± 0.27
Insula8.36 ± 0.19
Limbic Lobe8.18 ± 0.36
Mesencephalon8.38 ± 0.42
Myelencephalon8.24 ± 0.4
Occipital Lobe7.9 ± 0.36
Parietal Lobe8.1 ± 0.31
Pontine Tegmentum8.36 ± 0.26
Striatum8.55 ± 0.26
Subthalamus8.52 ± 0.09
Temporal Lobe8.28 ± 0.28
Thalamus8.22 ± 0.31
White Matter9.56 ± 0.31
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
2310015N07RikCBCerebellum7.71
8.44
2310015N07RikCTXCerebral cortex6.4
4.56
2310015N07RikHIPHippocampal region7.21
7.45
2310015N07RikHPFHippocampal formation6.11
5.65
2310015N07RikHYHypothalamus1.35
1.2
2310015N07RikLSXLateral septal complex0.95
0.65
2310015N07RikMBMidbrain1.9
2.15
2310015N07RikMYMedulla4.29
4.29
2310015N07RikOLFOlfactory bulb5.64
4.59
2310015N07RikPPons1.85
2.01
2310015N07RikPALPallidum1.13
0.94
2310015N07RikRHPRetrohippocampal region4.27
3.14
2310015N07RiksAMYStriatum-like amygdalar nuclei1.99
1.61
2310015N07RikSTRStriatum1.76
1.52
2310015N07RikSTRdStriatum dorsal region1.89
1.78
2310015N07RikSTRvStriatum ventral region1.53
1.03
2310015N07RikTHThalamus2.4
2.41
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00041674 19 59 77 LTFDTHALVQDLETHGFDK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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