AutismKB 2.0

Annotation Detail for C4orf41


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Basic Information Top
Gene Symbol:C4orf41 ( FLJ12716 )
Gene Full Name: chromosome 4 open reading frame 41
Band: 4q35.1
Quick LinksEntrez ID:60684; OMIM: NA; Uniprot ID:CD041_HUMAN; ENSEMBL ID: ENSG00000168538; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst3 / 6231948
fetus32 / 56401256
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult80 / 193912141
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor2 / 11424617
esophageal tumor1 / 1729057
gastrointestinal tumor4 / 11936933
germ cell tumor11 / 26384541
glioma2 / 10688318
head and neck tumor8 / 13630258
kidney tumor4 / 6895958
leukemia4 / 9584241
liver tumor3 / 9635931
lung tumor3 / 10312729
lymphoma2 / 7175527
non-neoplasia3 / 9725030
normal157 / 336030746
ovarian tumor3 / 7668239
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer9 / 10268087
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor9 / 12519171
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites0 / 400150 
bladder0 / 297570 
blood4 / 12347832
bone4 / 7165555
bone marrow0 / 488010 
brain53 / 110098948
cervix0 / 481710 
connective tissue8 / 14925553
ear1 / 1621261
embryonic tissue8 / 21572237
esophagus1 / 2020949
eye6 / 21105428
heart4 / 8962644
intestine11 / 23447246
kidney11 / 21177751
larynx0 / 241450 
liver4 / 20774319
lung11 / 33697432
lymph0 / 442700 
lymph node12 / 91610130
mammary gland8 / 15327152
mouth4 / 6705259
muscle2 / 10771518
nerve2 / 15768126
ovary4 / 10205139
pancreas3 / 21481213
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta12 / 28082542
prostate9 / 18934547
salivary gland2 / 2015599
skin8 / 21057437
spleen0 / 539520 
stomach5 / 9661951
testis34 / 330442102
thymus3 / 8113136
thyroid6 / 47473126
tonsil0 / 169990 
trachea13 / 52413248
umbilical cord0 / 136800 
uterus12 / 23287851
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218179_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts23.75
Adipocyte17.75
AdrenalCortex28.45
Adrenalgland17.15
Amygdala47.3
Appendix21.35
AtrioventricularNode20.95
BDCA4+_DentriticCells25.35
Bonemarrow19.05
BronchialEpithelialCells18.55
CD105+_Endothelial18.55
CD14+_Monocytes59.55
CD19+_BCells(neg._sel.)22
CD33+_Myeloid51.95
CD34+28.15
CD4+_Tcells17.7
CD56+_NKCells43.8
CD71+_EarlyErythroid17.55
CD8+_Tcells21.25
CardiacMyocytes38.75
Caudatenucleus16.65
Cerebellum14.15
CerebellumPeduncles22.85
CiliaryGanglion16.2
CingulateCortex22.1
Colorectaladenocarcinoma17.25
DorsalRootGanglion17.25
FetalThyroid21.85
Fetalbrain24.75
Fetalliver15
Fetallung14.55
GlobusPallidus15.95
Heart34.85
Hypothalamus20.65
Kidney15.25
Leukemia_chronicMyelogenousK-56214.7
Leukemia_promyelocytic-HL-6016.15
Leukemialymphoblastic(MOLT-4)27.4
Liver29.15
Lung18.5
Lymphnode16.4
Lymphoma_burkitts(Daudi)26.15
Lymphoma_burkitts(Raji)30.3
MedullaOblongata14.15
OccipitalLobe17.3
OlfactoryBulb13.9
Ovary17.3
Pancreas15.25
PancreaticIslet21.4
ParietalLobe23.35
Pituitary22.55
Placenta14.95
Pons17.8
PrefrontalCortex28.25
Prostate19.2
Salivarygland16.55
SkeletalMuscle27.4
Skin24.35
SmoothMuscle24.2
Spinalcord18.4
SubthalamicNucleus18.9
SuperiorCervicalGanglion27.75
TemporalLobe17.15
Testis13.1
TestisGermCell13.45
TestisIntersitial15.75
TestisLeydigCell18.65
TestisSeminiferousTubule15.15
Thalamus19.5
Thymus10.75
Thyroid29.8
Tongue19.5
Tonsil18.7
Trachea14.2
TrigeminalGanglion19.6
Uterus20.95
UterusCorpus21.3
WholeBlood34.6
Wholebrain12.45
colon46
pineal_day32.76
pineal_night42
retina23.525
small_intestine18.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P328819
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.02 ± 0.24
Basal Forebrain5.91 ± 0.25
Basal Part of Pons5.83 ± 0.34
Cerebellar Cortex6.2 ± 0.2
Cerebellar Nuclei5.95 ± 0.36
Claustrum5.76 ± 0.54
Epithalamus5.81 ± 0.18
Frontal Lobe5.94 ± 0.33
Globus Pallidus5.65 ± 0.33
Hypothalamus5.93 ± 0.41
Insula6.05 ± 0.31
Limbic Lobe5.97 ± 0.35
Mesencephalon5.92 ± 0.4
Myelencephalon5.88 ± 0.39
Occipital Lobe6.03 ± 0.33
Parietal Lobe5.94 ± 0.32
Pontine Tegmentum5.95 ± 0.34
Striatum5.71 ± 0.33
Subthalamus5.76 ± 0.29
Temporal Lobe6.01 ± 0.28
Thalamus5.78 ± 0.38
White Matter6.03 ± 0.31
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
D030016E14RikCBCerebellum18.98
21.3
D030016E14RikCTXCerebral cortex15.77
12.49
D030016E14RikHIPHippocampal region20.37
24.39
D030016E14RikHPFHippocampal formation15.17
16.72
D030016E14RikHYHypothalamus3.64
2.89
D030016E14RikLSXLateral septal complex2.14
2.15
D030016E14RikMBMidbrain6.21
6.45
D030016E14RikMYMedulla12.57
13.94
D030016E14RikOLFOlfactory bulb16.22
12.71
D030016E14RikPPons6.58
7.21
D030016E14RikPALPallidum3.93
3.51
D030016E14RikRHPRetrohippocampal region7.6
6.97
D030016E14RiksAMYStriatum-like amygdalar nuclei2.01
1.78
D030016E14RikSTRStriatum4.35
3.46
D030016E14RikSTRdStriatum dorsal region3.64
2.93
D030016E14RikSTRvStriatum ventral region9.96
7.13
D030016E14RikTHThalamus5.92
5.24
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00024407 20 874 893 CHKDETVTIETVFPFDVAVK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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