Annotation Detail for TNFRSF17
Basic Information Top
| Gene Symbol: | TNFRSF17 ( BCM,BCMA,CD269 ) |
|---|---|
| Gene Full Name: | tumor necrosis factor receptor superfamily, member 17 |
| Band: | 16p13.13 |
| Quick Links | Entrez ID:608; OMIM: 109545; Uniprot ID:TNR17_HUMAN; ENSEMBL ID: ENSG00000048462; HGNC ID: 11913 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.2556
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 0 / 564012 | 0 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 1 / 1939121 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 206641_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 170 |  |
| Adipocyte | 3.8 |  |
| AdrenalCortex | 4.1 | |
| Adrenalgland | 3.25 | |
| Amygdala | 4.1 | |
| Appendix | 4.05 | |
| AtrioventricularNode | 3.05 | |
| BDCA4+_DentriticCells | 435.25 |  |
| Bonemarrow | 4 | |
| BronchialEpithelialCells | 3.75 | |
| CD105+_Endothelial | 3.85 | |
| CD14+_Monocytes | 4.15 | |
| CD19+_BCells(neg._sel.) | 185.15 | |
| CD33+_Myeloid | 4.9 | |
| CD34+ | 5.95 | |
| CD4+_Tcells | 4.15 | |
| CD56+_NKCells | 19.7 |  |
| CD71+_EarlyErythroid | 3.65 | |
| CD8+_Tcells | 3.7 | |
| CardiacMyocytes | 5.05 | |
| Caudatenucleus | 3.45 | |
| Cerebellum | 3.1 | |
| CerebellumPeduncles | 4.4 | |
| CiliaryGanglion | 2.8 | |
| CingulateCortex | 3.95 | |
| Colorectaladenocarcinoma | 3.9 | |
| DorsalRootGanglion | 3 | |
| FetalThyroid | 3.75 | |
| Fetalbrain | 3.75 | |
| Fetalliver | 3.35 | |
| Fetallung | 3.15 | |
| GlobusPallidus | 2.85 | |
| Heart | 5.1 | |
| Hypothalamus | 4.15 | |
| Kidney | 3.05 | |
| Leukemia_chronicMyelogenousK-562 | 3.45 | |
| Leukemia_promyelocytic-HL-60 | 3.4 | |
| Leukemialymphoblastic(MOLT-4) | 3.1 | |
| Liver | 5.2 | |
| Lung | 4.2 | |
| Lymphnode | 6.4 | |
| Lymphoma_burkitts(Daudi) | 5.5 | |
| Lymphoma_burkitts(Raji) | 5.55 | |
| MedullaOblongata | 3.5 | |
| OccipitalLobe | 3.45 | |
| OlfactoryBulb | 3 | |
| Ovary | 2.6 | |
| Pancreas | 3.1 | |
| PancreaticIslet | 4.1 | |
| ParietalLobe | 4.1 | |
| Pituitary | 4.45 | |
| Placenta | 3.95 | |
| Pons | 3.7 | |
| PrefrontalCortex | 4.75 | |
| Prostate | 4.5 | |
| Salivarygland | 3.25 | |
| SkeletalMuscle | 4.55 | |
| Skin | 3.1 | |
| SmoothMuscle | 4.35 | |
| Spinalcord | 4.05 | |
| SubthalamicNucleus | 3.55 | |
| SuperiorCervicalGanglion | 4.8 | |
| TemporalLobe | 3.55 | |
| Testis | 3.3 | |
| TestisGermCell | 3.2 | |
| TestisIntersitial | 3.25 | |
| TestisLeydigCell | 3.8 | |
| TestisSeminiferousTubule | 3.25 | |
| Thalamus | 3.9 | |
| Thymus | 3.35 | |
| Thyroid | 4.85 | |
| Tongue | 3.8 | |
| Tonsil | 4.25 | |
| Trachea | 3.3 | |
| TrigeminalGanglion | 4.2 | |
| Uterus | 3.1 | |
| UterusCorpus | 3.5 | |
| WholeBlood | 4.2 | |
| Wholebrain | 3.25 | |
| colon | 6.7 | |
| pineal_day | 4.82 | |
| pineal_night | 4.72 | |
| retina | 4.625 | |
| small_intestine | 40.9 | |
- Probe name: A_23_P37736
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.25 ± 1.13 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.82 ± 0.22 | |
| Basal Part of Pons | 1.48 ± 0.46 | |
| Cerebellar Cortex | 1.31 ± 0.38 | |
| Cerebellar Nuclei | 2.04 ± 0.72 | |
| Claustrum | 2.45 ± 0.68 | |
| Epithalamus | 1.48 ± 0.95 | |
| Frontal Lobe | 1.58 ± 0.76 | |
| Globus Pallidus | 2.17 ± 0.52 | |
| Hypothalamus | 1.92 ± 0.81 | |
| Insula | 1.6 ± 0.47 | |
| Limbic Lobe | 1.73 ± 0.67 | |
| Mesencephalon | 2.05 ± 0.87 | |
| Myelencephalon | 1.9 ± 0.84 | |
| Occipital Lobe | 1.99 ± 0.93 | |
| Parietal Lobe | 1.78 ± 0.69 | |
| Pontine Tegmentum | 1.92 ± 0.84 | |
| Striatum | 4.37 ± 0.99 | |
| Subthalamus | 2.06 ± 0.86 | |
| Temporal Lobe | 1.56 ± 0.47 | |
| Thalamus | 1.79 ± 0.69 | |
| White Matter | 2.04 ± 0.32 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Tnfrsf17 | CB | Cerebellum | 7.02 | |
| 7.75 | | |||
| Tnfrsf17 | CTX | Cerebral cortex | 7.23 | |
| 4.86 | | |||
| Tnfrsf17 | HIP | Hippocampal region | 9.53 | |
| 8.9 | | |||
| Tnfrsf17 | HPF | Hippocampal formation | 10.77 | |
| 8.95 | | |||
| Tnfrsf17 | HY | Hypothalamus | 7.79 | |
| 5.93 | | |||
| Tnfrsf17 | LSX | Lateral septal complex | 0.7 | |
| 0.53 | | |||
| Tnfrsf17 | MB | Midbrain | 5.6 | |
| 5 | | |||
| Tnfrsf17 | MY | Medulla | 4.32 | |
| 5.7 | | |||
| Tnfrsf17 | OLF | Olfactory bulb | 10.56 | |
| 7.61 | | |||
| Tnfrsf17 | P | Pons | 7.5 | |
| 8.87 | | |||
| Tnfrsf17 | PAL | Pallidum | 5.91 | |
| 4.57 | | |||
| Tnfrsf17 | RHP | Retrohippocampal region | 13.86 | |
| 9.54 | | |||
| Tnfrsf17 | sAMY | Striatum-like amygdalar nuclei | 6.92 | |
| 4.87 | | |||
| Tnfrsf17 | STR | Striatum | 5.77 | |
| 4.11 | | |||
| Tnfrsf17 | STRd | Striatum dorsal region | 4.37 | |
| 3.3 | | |||
| Tnfrsf17 | STRv | Striatum ventral region | 12.83 | |
| 8.11 | | |||
| Tnfrsf17 | TH | Thalamus | 7.43 | |
| 5.43 | |
Peptide