AutismKB 2.0

Annotation Detail for RORC


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Basic Information Top
Gene Symbol:RORC ( MGC129539,NR1F3,RORG,RZR-GAMMA,RZRG,TOR )
Gene Full Name: RAR-related orphan receptor C
Band: 1q21
Quick LinksEntrez ID:6097; OMIM: 602943; Uniprot ID:RORG_HUMAN; ENSEMBL ID: ENSG00000143365; HGNC ID: 10260
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus11 / 56401219
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult21 / 193912110
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor2 / 3436658
chondrosarcoma1 / 8282312
colorectal tumor4 / 11424635
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor3 / 9635931
lung tumor3 / 10312729
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal41 / 336030712
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder1 / 2975733
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain2 / 11009891
cervix2 / 4817141
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine6 / 23447225
kidney4 / 21177718
larynx0 / 241450 
liver11 / 20774352
lung6 / 33697417
lymph0 / 442700 
lymph node3 / 9161032
mammary gland2 / 15327113
mouth2 / 6705229
muscle4 / 10771537
nerve0 / 157680 
ovary0 / 1020510 
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland2 / 16585120
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach1 / 9661910
testis3 / 3304429
thymus31 / 81131382
thyroid2 / 4747342
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus4 / 23287817
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206419_at
Cell line Expression level Expression bar
721_B_lymphoblasts4.55
Adipocyte3.65
AdrenalCortex3.75
Adrenalgland5.65
Amygdala3.95
Appendix3.65
AtrioventricularNode2.7
BDCA4+_DentriticCells4
Bonemarrow3.6
BronchialEpithelialCells3.55
CD105+_Endothelial3.65
CD14+_Monocytes3.85
CD19+_BCells(neg._sel.)4
CD33+_Myeloid4.7
CD34+4.55
CD4+_Tcells4.05
CD56+_NKCells4.55
CD71+_EarlyErythroid3.3
CD8+_Tcells3.6
CardiacMyocytes4.55
Caudatenucleus3.45
Cerebellum5.15
CerebellumPeduncles4.15
CiliaryGanglion2.55
CingulateCortex4.2
Colorectaladenocarcinoma3.7
DorsalRootGanglion2.75
FetalThyroid5.4
Fetalbrain3.7
Fetalliver3.45
Fetallung3.25
GlobusPallidus5.7
Heart5.15
Hypothalamus4
Kidney6.4
Leukemia_chronicMyelogenousK-5623.35
Leukemia_promyelocytic-HL-603.2
Leukemialymphoblastic(MOLT-4)3
Liver35.8
Lung4.15
Lymphnode3.25
Lymphoma_burkitts(Daudi)4.65
Lymphoma_burkitts(Raji)5.15
MedullaOblongata3.4
OccipitalLobe3.35
OlfactoryBulb2.9
Ovary2.4
Pancreas2.95
PancreaticIslet4.35
ParietalLobe4.4
Pituitary4.95
Placenta3.8
Pons7.05
PrefrontalCortex4.55
Prostate4.65
Salivarygland2.9
SkeletalMuscle9.6
Skin2.75
SmoothMuscle4.2
Spinalcord4
SubthalamicNucleus3.7
SuperiorCervicalGanglion4.1
TemporalLobe4.05
Testis3.15
TestisGermCell3.15
TestisIntersitial3
TestisLeydigCell3.65
TestisSeminiferousTubule4.8
Thalamus3.8
Thymus6.05
Thyroid4.7
Tongue3.6
Tonsil3.6
Trachea3.9
TrigeminalGanglion4
Uterus2.95
UterusCorpus3.25
WholeBlood4
Wholebrain3.2
colon3.7
pineal_day4.44
pineal_night4.34
retina4.5
small_intestine3.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P372910
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.57 ± 0.6
Basal Forebrain4.76 ± 0.78
Basal Part of Pons4.13 ± 1.13
Cerebellar Cortex4.14 ± 0.7
Cerebellar Nuclei4.55 ± 0.81
Claustrum4.72 ± 0.98
Epithalamus3.91 ± 0.71
Frontal Lobe4.38 ± 0.76
Globus Pallidus5.36 ± 0.64
Hypothalamus4.03 ± 0.94
Insula4.43 ± 0.66
Limbic Lobe4.68 ± 0.85
Mesencephalon4.61 ± 0.8
Myelencephalon4.61 ± 0.81
Occipital Lobe4.52 ± 0.74
Parietal Lobe4.39 ± 0.85
Pontine Tegmentum4.34 ± 0.66
Striatum4.84 ± 0.92
Subthalamus3.43 ± 1.3
Temporal Lobe4.4 ± 0.85
Thalamus4.46 ± 0.63
White Matter5.24 ± 0.43
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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