AutismKB 2.0

Annotation Detail for RPL3


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Basic Information Top
Gene Symbol:RPL3 ( MGC104284,TARBP-B )
Gene Full Name: ribosomal protein L3
Band: 22q13.1
Quick LinksEntrez ID:6122; OMIM: 604163; Uniprot ID:RL3_HUMAN; ENSEMBL ID: ENSG00000100316; HGNC ID: 10332
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body293 / 707614140
blastocyst359 / 623195760
fetus469 / 564012831
neonate50 / 310971607
infant32 / 236201354
juvenile144 / 555562591
adult2248 / 19391211159
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor27 / 127942110
bladder carcinoma21 / 174751201
breast (mammary gland) tumor184 / 941781953
cervical tumor165 / 343664801
chondrosarcoma127 / 828231533
colorectal tumor371 / 1142463247
esophageal tumor9 / 17290520
gastrointestinal tumor230 / 1193691926
germ cell tumor685 / 2638452596
glioma225 / 1068832105
head and neck tumor177 / 1363021298
kidney tumor162 / 689592349
leukemia203 / 958422118
liver tumor308 / 963593196
lung tumor531 / 1031275148
lymphoma500 / 717556968
non-neoplasia47 / 97250483
normal4496 / 33603071337
ovarian tumor126 / 766821643
pancreatic tumor324 / 1046163097
primitive neuroectodermal tumor of the CNS362 / 1256802880
prostate cancer226 / 1026802201
retinoblastoma322 / 463566946
skin tumor595 / 1249494761
soft tissue/muscle tissue tumor451 / 1251913602
uterine tumor321 / 902573556
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue38 / 131062899
adrenal gland37 / 331971114
ascites59 / 400151474
bladder36 / 297571209
blood224 / 1234781814
bone133 / 716551856
bone marrow148 / 488013032
brain1159 / 11009891052
cervix181 / 481713757
connective tissue120 / 149255803
ear12 / 16212740
embryonic tissue1066 / 2157224941
esophagus9 / 20209445
eye592 / 2110542804
heart68 / 89626758
intestine510 / 2344722175
kidney237 / 2117771119
larynx9 / 24145372
liver438 / 2077432108
lung690 / 3369742047
lymph426 / 442709622
lymph node101 / 916101102
mammary gland205 / 1532711337
mouth31 / 67052462
muscle276 / 1077152562
nerve31 / 157681966
ovary241 / 1020512361
pancreas646 / 2148123007
parathyroid7 / 20539340
pharynx378 / 413289146
pituitary gland80 / 165854823
placenta413 / 2808251470
prostate317 / 1893451674
salivary gland65 / 201553225
skin713 / 2105743385
spleen36 / 53952667
stomach175 / 966191811
testis298 / 330442901
thymus29 / 81131357
thyroid102 / 474732148
tonsil207 / 1699912177
trachea2 / 5241338
umbilical cord44 / 136803216
uterus536 / 2328782301
vascular40 / 51780772
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 211666_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts10133.8
Adipocyte3003.85
AdrenalCortex3135
Adrenalgland2140.65
Amygdala1082.3
Appendix2470.55
AtrioventricularNode1018.7
BDCA4+_DentriticCells6988.4
Bonemarrow2152.5
BronchialEpithelialCells5033.35
CD105+_Endothelial4298.45
CD14+_Monocytes4056.65
CD19+_BCells(neg._sel.)10261.65
CD33+_Myeloid4481.45
CD34+9382.85
CD4+_Tcells11060.65
CD56+_NKCells7635.95
CD71+_EarlyErythroid2808.85
CD8+_Tcells9242.05
CardiacMyocytes4378.75
Caudatenucleus1309.3
Cerebellum2332.3
CerebellumPeduncles3488.15
CiliaryGanglion748.95
CingulateCortex1085.95
Colorectaladenocarcinoma4950.55
DorsalRootGanglion1176.2
FetalThyroid3767.85
Fetalbrain2743.1
Fetalliver2059.4
Fetallung3733.95
GlobusPallidus835.35
Heart1095
Hypothalamus2112.4
Kidney1704.4
Leukemia_chronicMyelogenousK-5625029.9
Leukemia_promyelocytic-HL-605473.25
Leukemialymphoblastic(MOLT-4)5147.75
Liver3261.75
Lung4049.55
Lymphnode4507.7
Lymphoma_burkitts(Daudi)9845.85
Lymphoma_burkitts(Raji)9200.75
MedullaOblongata1178
OccipitalLobe1171.65
OlfactoryBulb2064.75
Ovary5539.6
Pancreas4362.65
PancreaticIslet6719.45
ParietalLobe1133.4
Pituitary5565.95
Placenta2493.9
Pons996.9
PrefrontalCortex3006.75
Prostate6772.55
Salivarygland2440
SkeletalMuscle235.75
Skin2551.5
SmoothMuscle5925.85
Spinalcord1986.25
SubthalamicNucleus912.4
SuperiorCervicalGanglion692.95
TemporalLobe1214.6
Testis2160.5
TestisGermCell4294.95
TestisIntersitial3114.5
TestisLeydigCell2442.95
TestisSeminiferousTubule2222.4
Thalamus1223.6
Thymus4143.05
Thyroid5419.9
Tongue1803.35
Tonsil4123.3
Trachea2844.75
TrigeminalGanglion740.05
Uterus5915.5
UterusCorpus4308.35
WholeBlood3607.1
Wholebrain2831.55
colon3519.05
pineal_day7927.38
pineal_night7219.02
retina3906.225
small_intestine4038.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P176344
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.57 ± 0.44
Basal Forebrain4.95 ± 0.26
Basal Part of Pons4.97 ± 0.43
Cerebellar Cortex5 ± 0.42
Cerebellar Nuclei4.97 ± 0.67
Claustrum4.41 ± 0.58
Epithalamus4.75 ± 0.45
Frontal Lobe4.58 ± 0.48
Globus Pallidus5.08 ± 0.59
Hypothalamus4.51 ± 0.59
Insula4.66 ± 0.35
Limbic Lobe4.44 ± 0.61
Mesencephalon4.61 ± 0.49
Myelencephalon4.62 ± 0.52
Occipital Lobe4.35 ± 0.46
Parietal Lobe4.64 ± 0.55
Pontine Tegmentum4.45 ± 0.6
Striatum4.84 ± 0.63
Subthalamus4.72 ± 0.27
Temporal Lobe4.62 ± 0.51
Thalamus4.54 ± 0.53
White Matter5.16 ± 0.42
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00000406 16 178 193 AHLMEIQVNGGTVAEK Peptide Atlas
RL3_HUMAN_10 9 10 18 HGSLGFLPR PRIDE
RL3_HUMAN_103 12 103 114 TVFAEHISDECK PRIDE
RL3_HUMAN_103 13 103 115 TVFAEHISDECKR PRIDE
RL3_HUMAN_161 8 161 168 VIAHTQMR PRIDE
RL3_HUMAN_177 16 177 192 AHLMEIQVNGGTVAEK PRIDE
RL3_HUMAN_198 26 198 223 ERLEQQVPVNQVFGQDEMIDVIGVTK PRIDE
RL3_HUMAN_200 24 200 223 LEQQVPVNQVFGQDEMIDVIGVTK PRIDE
RL3_HUMAN_268 9 268 276 AGQKGYHHR PRIDE
RL3_HUMAN_286 8 286 293 IGQGYLIK PRIDE
RL3_HUMAN_30 20 30 49 SFPKDDPSKPVHLTAFLGYK PRIDE
RL3_HUMAN_300 12 300 311 NNASTDYDLSDK PRIDE
RL3_HUMAN_312 22 312 333 SINPLGGFVHYGEVTNDFVMLK PRIDE
RL3_HUMAN_34 16 34 49 DDPSKPVHLTAFLGYK PRIDE
RL3_HUMAN_385 8 385 392 KAFMGPLK PRIDE
RL3_HUMAN_386 8 386 393 AFMGPLKK PRIDE
RL3_HUMAN_50 8 50 57 AGMTHIVR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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