AutismKB 2.0

Annotation Detail for RPL7


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Basic Information Top
Gene Symbol:RPL7 ( MGC117326,humL7-1 )
Gene Full Name: ribosomal protein L7
Band: 8q21.11
Quick LinksEntrez ID:6129; OMIM: 604166; Uniprot ID:RL7_HUMAN; ENSEMBL ID: ENSG00000147604; HGNC ID: 10363
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body23 / 70761325
blastocyst15 / 62319240
fetus67 / 564012118
neonate13 / 31097418
infant2 / 2362084
juvenile8 / 55556143
adult504 / 1939121259
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor9 / 12794703
bladder carcinoma7 / 17475400
breast (mammary gland) tumor54 / 94178573
cervical tumor19 / 34366552
chondrosarcoma12 / 82823144
colorectal tumor34 / 114246297
esophageal tumor5 / 17290289
gastrointestinal tumor48 / 119369402
germ cell tumor136 / 263845515
glioma21 / 106883196
head and neck tumor24 / 136302176
kidney tumor47 / 68959681
leukemia37 / 95842386
liver tumor59 / 96359612
lung tumor76 / 103127736
lymphoma70 / 71755975
non-neoplasia1 / 9725010
normal940 / 3360307279
ovarian tumor21 / 76682273
pancreatic tumor96 / 104616917
primitive neuroectodermal tumor of the CNS52 / 125680413
prostate cancer117 / 1026801139
retinoblastoma40 / 46356862
skin tumor84 / 124949672
soft tissue/muscle tissue tumor78 / 125191623
uterine tumor44 / 90257487
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland11 / 33197331
ascites14 / 40015349
bladder17 / 29757571
blood55 / 123478445
bone64 / 71655893
bone marrow52 / 488011065
brain128 / 1100989116
cervix20 / 48171415
connective tissue7 / 14925546
ear19 / 162121171
embryonic tissue80 / 215722370
esophagus5 / 20209247
eye73 / 211054345
heart15 / 89626167
intestine46 / 234472196
kidney50 / 211777236
larynx3 / 24145124
liver77 / 207743370
lung128 / 336974379
lymph56 / 442701264
lymph node20 / 91610218
mammary gland56 / 153271365
mouth5 / 6705274
muscle54 / 107715501
nerve8 / 15768507
ovary44 / 102051431
pancreas141 / 214812656
parathyroid1 / 2053948
pharynx44 / 413281064
pituitary gland7 / 16585422
placenta69 / 280825245
prostate138 / 189345728
salivary gland17 / 20155843
skin91 / 210574432
spleen9 / 53952166
stomach46 / 96619476
testis79 / 330442239
thymus6 / 8113173
thyroid12 / 47473252
tonsil25 / 169991470
trachea2 / 5241338
umbilical cord13 / 13680950
uterus78 / 232878334
vascular20 / 51780386
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 200717_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts13790.75
Adipocyte6158.7
AdrenalCortex4007.9
Adrenalgland2440
Amygdala4157.15
Appendix6892.25
AtrioventricularNode2337.75
BDCA4+_DentriticCells8130.05
Bonemarrow3131.3
BronchialEpithelialCells8748.55
CD105+_Endothelial9441.95
CD14+_Monocytes8552.35
CD19+_BCells(neg._sel.)11627.6
CD33+_Myeloid9166.7
CD34+12651.25
CD4+_Tcells11967.8
CD56+_NKCells7704.45
CD71+_EarlyErythroid4781.8
CD8+_Tcells10592.7
CardiacMyocytes6058.1
Caudatenucleus4033
Cerebellum1560.35
CerebellumPeduncles1160.2
CiliaryGanglion1932
CingulateCortex2403.2
Colorectaladenocarcinoma3138.5
DorsalRootGanglion3367.9
FetalThyroid8162.35
Fetalbrain7259.35
Fetalliver4099.55
Fetallung6147.8
GlobusPallidus1730.6
Heart145.5
Hypothalamus5187.4
Kidney2446.25
Leukemia_chronicMyelogenousK-5629543
Leukemia_promyelocytic-HL-6010430.7
Leukemialymphoblastic(MOLT-4)7552.45
Liver344.25
Lung2585.15
Lymphnode7420.55
Lymphoma_burkitts(Daudi)13315.15
Lymphoma_burkitts(Raji)16321.2
MedullaOblongata2739.7
OccipitalLobe3096.5
OlfactoryBulb5380.2
Ovary7115.3
Pancreas6622.2
PancreaticIslet7782.65
ParietalLobe2125.95
Pituitary10805.85
Placenta2792.15
Pons1908.2
PrefrontalCortex4232.05
Prostate5953.75
Salivarygland6274.75
SkeletalMuscle2137.8
Skin4568.85
SmoothMuscle10381.6
Spinalcord6257.75
SubthalamicNucleus2305.05
SuperiorCervicalGanglion2092.75
TemporalLobe2601.6
Testis1885.6
TestisGermCell4407.2
TestisIntersitial3835.8
TestisLeydigCell3785.05
TestisSeminiferousTubule2793.55
Thalamus3108.45
Thymus3840.9
Thyroid8108.05
Tongue5007.8
Tonsil5520.7
Trachea5060.7
TrigeminalGanglion2966.55
Uterus7296.1
UterusCorpus8090.5
WholeBlood6859.9
Wholebrain2204.1
colon5410.4
pineal_day5179.22
pineal_night4596.7
retina4487.675
small_intestine4183.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P155364
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala11.35 ± 0.42
Basal Forebrain11.5 ± 0.27
Basal Part of Pons11.47 ± 0.31
Cerebellar Cortex11.42 ± 0.32
Cerebellar Nuclei11.42 ± 0.44
Claustrum11.18 ± 0.42
Epithalamus11.37 ± 0.61
Frontal Lobe11.26 ± 0.42
Globus Pallidus12.18 ± 0.25
Hypothalamus11.4 ± 0.56
Insula11.39 ± 0.44
Limbic Lobe10.99 ± 0.5
Mesencephalon11.24 ± 0.48
Myelencephalon11.17 ± 0.43
Occipital Lobe10.77 ± 0.57
Parietal Lobe11.23 ± 0.38
Pontine Tegmentum11.29 ± 0.38
Striatum11.05 ± 0.45
Subthalamus11.7 ± 0.28
Temporal Lobe11.18 ± 0.41
Thalamus11.12 ± 0.38
White Matter11.72 ± 0.73
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rpl7CBCerebellum83.31
100
Rpl7CTXCerebral cortex100
100
Rpl7HIPHippocampal region100
100
Rpl7HPFHippocampal formation100
100
Rpl7HYHypothalamus100
100
Rpl7LSXLateral septal complex100
100
Rpl7MBMidbrain100
100
Rpl7MYMedulla100
100
Rpl7OLFOlfactory bulb100
100
Rpl7PPons100
100
Rpl7PALPallidum100
100
Rpl7RHPRetrohippocampal region100
100
Rpl7sAMYStriatum-like amygdalar nuclei100
100
Rpl7STRStriatum100
100
Rpl7STRdStriatum dorsal region100
100
Rpl7STRvStriatum ventral region100
100
Rpl7THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00006655 12 166 177 RIALTDNALIAR Peptide Atlas
RL7_HUMAN_1 22 1 22 MEGVEEKKKEVPAVPETLKKKR PRIDE
RL7_HUMAN_116 16 116 131 QIFNGTFVKLNKASIN PRIDE
RL7_HUMAN_116 19 116 134 QIFNGTFVKLNKASINMLR PRIDE
RL7_HUMAN_127 7 127 133 ASINMLR PRIDE
RL7_HUMAN_134 14 134 147 IVEPYIAWGYPNLK PRIDE
RL7_HUMAN_166 11 166 176 IALTDNALIAR PRIDE
RL7_HUMAN_167 11 167 177 IALTDNALIAR PRIDE
RL7_HUMAN_181 18 181 198 YGIICMEDLIHEIYTVGK PRIDE
RL7_HUMAN_181 19 181 199 YGIICMEDLIHEIYTVGKR PRIDE
RL7_HUMAN_200 12 200 211 FKEANNFLWPFK PRIDE
RL7_HUMAN_222 20 222 241 KTTHFVEGGDAGNREDQINR PRIDE
RL7_HUMAN_223 19 223 241 TTHFVEGGDAGNREDQINR PRIDE
RL7_HUMAN_77 11 77 87 AGNFYVPAEPK PRIDE
RL7_HUMAN_9 10 9 18 EVPAVPETLK PRIDE
RL7_HUMAN_97 10 97 106 GINGVSPKVR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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