Annotation Detail for RPL9
Basic Information Top
| Gene Symbol: | RPL9 ( DKFZp313J1510,FLJ27456,MGC15545,NPC-A-16,RPL9P7,RPL9P8,RPL9P9 ) |
|---|---|
| Gene Full Name: | ribosomal protein L9 |
| Band: | 4p14 |
| Quick Links | Entrez ID:6133; OMIM: 603686; Uniprot ID:RL9_HUMAN; ENSEMBL ID: ENSG00000163682; HGNC ID: 10369 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.513083
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 18 / 70761 | 254 |  |
| blastocyst | 22 / 62319 | 353 | |
| fetus | 160 / 564012 | 283 | |
| neonate | 14 / 31097 | 450 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 8 / 55556 | 143 |  |
| adult | 472 / 1939121 | 243 | |
| embryoid body | 64 / 70761 | 904 | |
| blastocyst | 210 / 62319 | 3369 |  |
| fetus | 239 / 564012 | 423 | |
| neonate | 37 / 31097 | 1189 | |
| infant | 5 / 23620 | 211 | |
| juvenile | 33 / 55556 | 593 | |
| adult | 946 / 1939121 | 487 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 3 / 12794 | 234 | |
| bladder carcinoma | 3 / 17475 | 171 | |
| breast (mammary gland) tumor | 11 / 94178 | 116 | |
| cervical tumor | 15 / 34366 | 436 | |
| chondrosarcoma | 43 / 82823 | 519 | |
| colorectal tumor | 37 / 114246 | 323 | |
| esophageal tumor | 3 / 17290 | 173 | |
| gastrointestinal tumor | 27 / 119369 | 226 | |
| germ cell tumor | 41 / 263845 | 155 | |
| glioma | 2 / 106883 | 18 |  |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 25 / 68959 | 362 | |
| leukemia | 29 / 95842 | 302 | |
| liver tumor | 58 / 96359 | 601 | |
| lung tumor | 31 / 103127 | 300 | |
| lymphoma | 32 / 71755 | 445 | |
| non-neoplasia | 18 / 97250 | 185 | |
| normal | 777 / 3360307 | 231 | |
| ovarian tumor | 19 / 76682 | 247 | |
| pancreatic tumor | 23 / 104616 | 219 | |
| primitive neuroectodermal tumor of the CNS | 36 / 125680 | 286 | |
| prostate cancer | 59 / 102680 | 574 | |
| retinoblastoma | 16 / 46356 | 345 | |
| skin tumor | 42 / 124949 | 336 | |
| soft tissue/muscle tissue tumor | 47 / 125191 | 375 | |
| uterine tumor | 25 / 90257 | 276 | |
| adrenal tumor | 5 / 12794 | 390 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 57 / 94178 | 605 | |
| cervical tumor | 41 / 34366 | 1193 | |
| chondrosarcoma | 51 / 82823 | 615 | |
| colorectal tumor | 78 / 114246 | 682 | |
| esophageal tumor | 7 / 17290 | 404 | |
| gastrointestinal tumor | 122 / 119369 | 1022 | |
| germ cell tumor | 148 / 263845 | 560 | |
| glioma | 28 / 106883 | 261 | |
| head and neck tumor | 26 / 136302 | 190 | |
| kidney tumor | 56 / 68959 | 812 | |
| leukemia | 50 / 95842 | 521 | |
| liver tumor | 197 / 96359 | 2044 | |
| lung tumor | 153 / 103127 | 1483 | |
| lymphoma | 104 / 71755 | 1449 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 2120 / 3360307 | 630 | |
| ovarian tumor | 46 / 76682 | 599 | |
| pancreatic tumor | 65 / 104616 | 621 | |
| primitive neuroectodermal tumor of the CNS | 118 / 125680 | 938 | |
| prostate cancer | 190 / 102680 | 1850 | |
| retinoblastoma | 82 / 46356 | 1768 | |
| skin tumor | 109 / 124949 | 872 | |
| soft tissue/muscle tissue tumor | 175 / 125191 | 1397 | |
| uterine tumor | 54 / 90257 | 598 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 5 / 13106 | 381 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 13 / 40015 | 324 | |
| bladder | 7 / 29757 | 235 | |
| blood | 36 / 123478 | 291 | |
| bone | 39 / 71655 | 544 | |
| bone marrow | 28 / 48801 | 573 | |
| brain | 123 / 1100989 | 111 | |
| cervix | 18 / 48171 | 373 | |
| connective tissue | 45 / 149255 | 301 | |
| ear | 7 / 16212 | 431 | |
| embryonic tissue | 81 / 215722 | 375 | |
| esophagus | 3 / 20209 | 148 | |
| eye | 64 / 211054 | 303 | |
| heart | 34 / 89626 | 379 | |
| intestine | 53 / 234472 | 226 | |
| kidney | 39 / 211777 | 184 | |
| larynx | 0 / 24145 | 0 | |
| liver | 93 / 207743 | 447 | |
| lung | 100 / 336974 | 296 | |
| lymph | 14 / 44270 | 316 | |
| lymph node | 19 / 91610 | 207 | |
| mammary gland | 19 / 153271 | 123 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 30 / 107715 | 278 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 41 / 102051 | 401 | |
| pancreas | 180 / 214812 | 837 | |
| parathyroid | 11 / 20539 | 535 | |
| pharynx | 9 / 41328 | 217 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 51 / 280825 | 181 | |
| prostate | 91 / 189345 | 480 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 54 / 210574 | 256 | |
| spleen | 15 / 53952 | 278 | |
| stomach | 19 / 96619 | 196 | |
| testis | 25 / 330442 | 75 | |
| thymus | 8 / 81131 | 98 | |
| thyroid | 6 / 47473 | 126 | |
| tonsil | 4 / 16999 | 235 | |
| trachea | 12 / 52413 | 228 | |
| umbilical cord | 16 / 13680 | 1169 | |
| uterus | 66 / 232878 | 283 | |
| vascular | 29 / 51780 | 560 | |
| adipose tissue | 14 / 13106 | 1068 | |
| adrenal gland | 17 / 33197 | 512 | |
| ascites | 66 / 40015 | 1649 | |
| bladder | 9 / 29757 | 302 | |
| blood | 85 / 123478 | 688 | |
| bone | 61 / 71655 | 851 | |
| bone marrow | 22 / 48801 | 450 | |
| brain | 414 / 1100989 | 376 | |
| cervix | 41 / 48171 | 851 | |
| connective tissue | 30 / 149255 | 200 | |
| ear | 6 / 16212 | 370 | |
| embryonic tissue | 547 / 215722 | 2535 | |
| esophagus | 7 / 20209 | 346 | |
| eye | 199 / 211054 | 942 | |
| heart | 102 / 89626 | 1138 | |
| intestine | 118 / 234472 | 503 | |
| kidney | 92 / 211777 | 434 | |
| larynx | 2 / 24145 | 82 | |
| liver | 274 / 207743 | 1318 | |
| lung | 260 / 336974 | 771 | |
| lymph | 78 / 44270 | 1761 | |
| lymph node | 45 / 91610 | 491 | |
| mammary gland | 62 / 153271 | 404 | |
| mouth | 14 / 67052 | 208 | |
| muscle | 137 / 107715 | 1271 | |
| nerve | 6 / 15768 | 380 | |
| ovary | 106 / 102051 | 1038 | |
| pancreas | 294 / 214812 | 1368 | |
| parathyroid | 8 / 20539 | 389 | |
| pharynx | 18 / 41328 | 435 | |
| pituitary gland | 16 / 16585 | 964 | |
| placenta | 100 / 280825 | 356 | |
| prostate | 225 / 189345 | 1188 | |
| salivary gland | 17 / 20155 | 843 | |
| skin | 126 / 210574 | 598 | |
| spleen | 38 / 53952 | 704 | |
| stomach | 67 / 96619 | 693 | |
| testis | 59 / 330442 | 178 | |
| thymus | 42 / 81131 | 517 | |
| thyroid | 7 / 47473 | 147 | |
| tonsil | 110 / 16999 | 6470 | |
| trachea | 8 / 52413 | 152 | |
| umbilical cord | 37 / 13680 | 2704 | |
| uterus | 172 / 232878 | 738 | |
| vascular | 52 / 51780 | 1004 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 200032_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 9344.45 | |
| Adipocyte | 4628.3 | |
| AdrenalCortex | 4464.1 | |
| Adrenalgland | 3161.35 | |
| Amygdala | 2570.35 | |
| Appendix | 5651.95 | |
| AtrioventricularNode | 1534.95 | |
| BDCA4+_DentriticCells | 6418.5 | |
| Bonemarrow | 2780.9 | |
| BronchialEpithelialCells | 9487.85 | |
| CD105+_Endothelial | 6873.45 | |
| CD14+_Monocytes | 7108.85 | |
| CD19+_BCells(neg._sel.) | 7898.3 | |
| CD33+_Myeloid | 6152.95 | |
| CD34+ | 8353.85 | |
| CD4+_Tcells | 10768.1 | |
| CD56+_NKCells | 6432.9 | |
| CD71+_EarlyErythroid | 3699.3 | |
| CD8+_Tcells | 9615.25 | |
| CardiacMyocytes | 5422.9 | |
| Caudatenucleus | 2158.4 | |
| Cerebellum | 3151.6 | |
| CerebellumPeduncles | 4795 | |
| CiliaryGanglion | 1540.7 | |
| CingulateCortex | 2092.4 | |
| Colorectaladenocarcinoma | 2279.65 | |
| DorsalRootGanglion | 1721.7 | |
| FetalThyroid | 6118.2 | |
| Fetalbrain | 5159.45 | |
| Fetalliver | 3530.15 | |
| Fetallung | 4970.35 | |
| GlobusPallidus | 1751.25 | |
| Heart | 2224 | |
| Hypothalamus | 3474.35 | |
| Kidney | 2783 | |
| Leukemia_chronicMyelogenousK-562 | 5554.6 | |
| Leukemia_promyelocytic-HL-60 | 8429.85 | |
| Leukemialymphoblastic(MOLT-4) | 7019.15 | |
| Liver | 2127.3 | |
| Lung | 4243.65 | |
| Lymphnode | 6418.85 | |
| Lymphoma_burkitts(Daudi) | 10183 | |
| Lymphoma_burkitts(Raji) | 8577.15 | |
| MedullaOblongata | 2181.1 | |
| OccipitalLobe | 2386.95 | |
| OlfactoryBulb | 3641.65 | |
| Ovary | 6383.15 | |
| Pancreas | 4525 | |
| PancreaticIslet | 8126.5 | |
| ParietalLobe | 1719.4 | |
| Pituitary | 6598.2 | |
| Placenta | 3646.6 | |
| Pons | 1769.55 | |
| PrefrontalCortex | 4275.3 | |
| Prostate | 5251.3 | |
| Salivarygland | 4649.8 | |
| SkeletalMuscle | 1330.75 | |
| Skin | 2903 | |
| SmoothMuscle | 7985.6 | |
| Spinalcord | 3915.05 | |
| SubthalamicNucleus | 2020.4 | |
| SuperiorCervicalGanglion | 1042.2 | |
| TemporalLobe | 3321.9 | |
| Testis | 3519.6 | |
| TestisGermCell | 4042.6 | |
| TestisIntersitial | 3061.9 | |
| TestisLeydigCell | 2767.3 | |
| TestisSeminiferousTubule | 2675.15 | |
| Thalamus | 2363.2 | |
| Thymus | 5765.9 | |
| Thyroid | 5457.3 | |
| Tongue | 3827.4 | |
| Tonsil | 5573.95 | |
| Trachea | 3546.8 | |
| TrigeminalGanglion | 1822.6 | |
| Uterus | 5592 | |
| UterusCorpus | 5342.35 | |
| WholeBlood | 7617.6 | |
| Wholebrain | 3316.9 | |
| colon | 6763.4 | |
| pineal_day | 5409.16 | |
| pineal_night | 4531.84 | |
| retina | 5030.6 | |
| small_intestine | 7072.4 | |
- Probe name: A_24_P232856
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 12.49 ± 0.24 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 12.55 ± 0.13 | |
| Basal Part of Pons | 12.33 ± 0.24 | |
| Cerebellar Cortex | 12.55 ± 0.21 | |
| Cerebellar Nuclei | 12.2 ± 0.31 | |
| Claustrum | 11.94 ± 0.42 | |
| Epithalamus | 12.41 ± 0.34 | |
| Frontal Lobe | 12.34 ± 0.27 | |
| Globus Pallidus | 12.77 ± 0.18 | |
| Hypothalamus | 12.56 ± 0.2 | |
| Insula | 12.45 ± 0.27 | |
| Limbic Lobe | 12.13 ± 0.28 | |
| Mesencephalon | 12.42 ± 0.29 | |
| Myelencephalon | 12.28 ± 0.28 | |
| Occipital Lobe | 11.99 ± 0.28 | |
| Parietal Lobe | 12.31 ± 0.28 | |
| Pontine Tegmentum | 12.33 ± 0.27 | |
| Striatum | 12.3 ± 0.3 | |
| Subthalamus | 12.49 ± 0.09 | |
| Temporal Lobe | 12.37 ± 0.26 | |
| Thalamus | 12.2 ± 0.25 | |
| White Matter | 12.71 ± 0.66 | |
Mouse Brain ISH 
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00001581 | 14 | 37 | 50 | DFNHINVELSLLGK | Peptide Atlas |
| RL9_HUMAN_1 | 23 | 1 | 23 | MKTILSNQTVDIPENVDITLKGR | PRIDE |
| RL9_HUMAN_173 | 11 | 173 | 183 | KFLDGIYVSEK | PRIDE |
| RL9_HUMAN_173 | 19 | 173 | 191 | KFLDGIYVSEKGTVQQADE | PRIDE |
| RL9_HUMAN_174 | 10 | 174 | 183 | FLDGIYVSEK | PRIDE |
| RL9_HUMAN_2 | 19 | 2 | 20 | TILSNQTVDIPENVDITLK | PRIDE |
| RL9_HUMAN_24 | 8 | 24 | 31 | TVIVKGPR | PRIDE |
| RL9_HUMAN_35 | 15 | 35 | 49 | RDFNHINVELSLLGK | PRIDE |
| RL9_HUMAN_36 | 14 | 36 | 49 | DFNHINVELSLLGK | PRIDE |
| RL9_HUMAN_36 | 15 | 36 | 50 | DFNHINVELSLLGKK | PRIDE |
| RL9_HUMAN_71 | 11 | 71 | 81 | TICSHVQNMIK | PRIDE |