AutismKB 2.0

Annotation Detail for RPL17


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Basic Information Top
Gene Symbol:RPL17 ( FLJ92089,MGC117162,rpL23 )
Gene Full Name: ribosomal protein L17
Band: 18q21.1
Quick LinksEntrez ID:6139; OMIM: 603661; Uniprot ID:RL17_HUMAN; ENSEMBL ID: ENSG00000215472; HGNC ID: 10307
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body45 / 70761635
blastocyst91 / 623191460
fetus56 / 56401299
neonate11 / 31097353
infant6 / 23620254
juvenile9 / 55556161
adult297 / 1939121153
embryoid body8 / 70761113
blastocyst25 / 62319401
fetus73 / 564012129
neonate13 / 31097418
infant1 / 2362042
juvenile4 / 5555671
adult328 / 1939121169
embryoid body17 / 70761240
blastocyst31 / 62319497
fetus43 / 56401276
neonate9 / 31097289
infant4 / 23620169
juvenile4 / 5555671
adult147 / 193912175
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor9 / 12794703
bladder carcinoma1 / 1747557
breast (mammary gland) tumor31 / 94178329
cervical tumor7 / 34366203
chondrosarcoma8 / 8282396
colorectal tumor20 / 114246175
esophageal tumor1 / 1729057
gastrointestinal tumor74 / 119369619
germ cell tumor67 / 263845253
glioma10 / 10688393
head and neck tumor7 / 13630251
kidney tumor25 / 68959362
leukemia11 / 95842114
liver tumor22 / 96359228
lung tumor66 / 103127639
lymphoma49 / 71755682
non-neoplasia1 / 9725010
normal667 / 3360307198
ovarian tumor32 / 76682417
pancreatic tumor12 / 104616114
primitive neuroectodermal tumor of the CNS26 / 125680206
prostate cancer70 / 102680681
retinoblastoma35 / 46356755
skin tumor49 / 124949392
soft tissue/muscle tissue tumor64 / 125191511
uterine tumor31 / 90257343
adrenal tumor3 / 12794234
bladder carcinoma7 / 17475400
breast (mammary gland) tumor22 / 94178233
cervical tumor3 / 3436687
chondrosarcoma16 / 82823193
colorectal tumor35 / 114246306
esophageal tumor3 / 17290173
gastrointestinal tumor13 / 119369108
germ cell tumor30 / 263845113
glioma5 / 10688346
head and neck tumor21 / 136302154
kidney tumor17 / 68959246
leukemia25 / 95842260
liver tumor13 / 96359134
lung tumor76 / 103127736
lymphoma38 / 71755529
non-neoplasia7 / 9725071
normal384 / 3360307114
ovarian tumor23 / 76682299
pancreatic tumor28 / 104616267
primitive neuroectodermal tumor of the CNS24 / 125680190
prostate cancer54 / 102680525
retinoblastoma6 / 46356129
skin tumor32 / 124949256
soft tissue/muscle tissue tumor35 / 125191279
uterine tumor25 / 90257276
adrenal tumor1 / 1279478
bladder carcinoma3 / 17475171
breast (mammary gland) tumor23 / 94178244
cervical tumor7 / 34366203
chondrosarcoma7 / 8282384
colorectal tumor20 / 114246175
esophageal tumor0 / 172900 
gastrointestinal tumor12 / 119369100
germ cell tumor19 / 26384572
glioma1 / 1068839
head and neck tumor8 / 13630258
kidney tumor7 / 68959101
leukemia5 / 9584252
liver tumor21 / 96359217
lung tumor26 / 103127252
lymphoma55 / 71755766
non-neoplasia3 / 9725030
normal323 / 336030796
ovarian tumor5 / 7668265
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS12 / 12568095
prostate cancer17 / 102680165
retinoblastoma11 / 46356237
skin tumor30 / 124949240
soft tissue/muscle tissue tumor30 / 125191239
uterine tumor14 / 90257155
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland15 / 33197451
ascites28 / 40015699
bladder4 / 29757134
blood17 / 123478137
bone10 / 71655139
bone marrow7 / 48801143
brain111 / 1100989100
cervix7 / 48171145
connective tissue10 / 14925566
ear1 / 1621261
embryonic tissue282 / 2157221307
esophagus1 / 2020949
eye58 / 211054274
heart19 / 89626211
intestine29 / 234472123
kidney54 / 211777254
larynx0 / 241450 
liver40 / 207743192
lung81 / 336974240
lymph44 / 44270993
lymph node20 / 91610218
mammary gland31 / 153271202
mouth3 / 6705244
muscle51 / 107715473
nerve3 / 15768190
ovary39 / 102051382
pancreas26 / 214812121
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland4 / 16585241
placenta46 / 280825163
prostate97 / 189345512
salivary gland4 / 20155198
skin54 / 210574256
spleen12 / 53952222
stomach42 / 96619434
testis27 / 33044281
thymus15 / 81131184
thyroid4 / 4747384
tonsil44 / 169992588
trachea4 / 5241376
umbilical cord11 / 13680804
uterus76 / 232878326
vascular23 / 51780444
adipose tissue0 / 131060 
adrenal gland3 / 3319790
ascites2 / 4001549
bladder5 / 29757168
blood28 / 123478226
bone32 / 71655446
bone marrow11 / 48801225
brain66 / 110098959
cervix4 / 4817183
connective tissue9 / 14925560
ear3 / 16212185
embryonic tissue56 / 215722259
esophagus3 / 20209148
eye27 / 211054127
heart34 / 89626379
intestine42 / 234472179
kidney33 / 211777155
larynx4 / 24145165
liver37 / 207743178
lung108 / 336974320
lymph30 / 44270677
lymph node8 / 9161087
mammary gland23 / 153271150
mouth3 / 6705244
muscle23 / 107715213
nerve3 / 15768190
ovary38 / 102051372
pancreas45 / 214812209
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland2 / 16585120
placenta25 / 28082589
prostate68 / 189345359
salivary gland3 / 20155148
skin46 / 210574218
spleen10 / 53952185
stomach13 / 96619134
testis15 / 33044245
thymus6 / 8113173
thyroid15 / 47473315
tonsil13 / 16999764
trachea3 / 5241357
umbilical cord13 / 13680950
uterus47 / 232878201
vascular6 / 51780115
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites4 / 4001599
bladder3 / 29757100
blood8 / 12347864
bone4 / 7165555
bone marrow13 / 48801266
brain27 / 110098924
cervix8 / 48171166
connective tissue11 / 14925573
ear0 / 162120 
embryonic tissue106 / 215722491
esophagus0 / 202090 
eye48 / 211054227
heart19 / 89626211
intestine26 / 234472110
kidney7 / 21177733
larynx1 / 2414541
liver33 / 207743158
lung40 / 336974118
lymph49 / 442701106
lymph node6 / 9161065
mammary gland23 / 153271150
mouth0 / 670520 
muscle16 / 107715148
nerve0 / 157680 
ovary11 / 102051107
pancreas6 / 21481227
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland10 / 16585602
placenta18 / 28082564
prostate24 / 189345126
salivary gland6 / 20155297
skin35 / 210574166
spleen2 / 5395237
stomach8 / 9661982
testis4 / 33044212
thymus2 / 8113124
thyroid3 / 4747363
tonsil28 / 169991647
trachea0 / 524130 
umbilical cord9 / 13680657
uterus34 / 232878145
vascular6 / 51780115
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212270_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts8854.85
Adipocyte3944.5
AdrenalCortex4531.1
Adrenalgland1352.35
Amygdala1349.05
Appendix3028.3
AtrioventricularNode1218.3
BDCA4+_DentriticCells8248.05
Bonemarrow1309.65
BronchialEpithelialCells7005.85
CD105+_Endothelial6292.3
CD14+_Monocytes4789.3
CD19+_BCells(neg._sel.)9255.5
CD33+_Myeloid6372.1
CD34+9295.45
CD4+_Tcells10249.55
CD56+_NKCells7834.7
CD71+_EarlyErythroid3127.75
CD8+_Tcells7326.05
CardiacMyocytes4775.05
Caudatenucleus1583.35
Cerebellum672.7
CerebellumPeduncles2003.05
CiliaryGanglion1010.35
CingulateCortex1143.8
Colorectaladenocarcinoma1516.05
DorsalRootGanglion1206.8
FetalThyroid4530.35
Fetalbrain3645.65
Fetalliver2176.55
Fetallung4191.7
GlobusPallidus814.2
Heart311.45
Hypothalamus2192.2
Kidney738.45
Leukemia_chronicMyelogenousK-5626807.3
Leukemia_promyelocytic-HL-6012047.8
Leukemialymphoblastic(MOLT-4)3835
Liver399.95
Lung1034.45
Lymphnode4807.9
Lymphoma_burkitts(Daudi)9363
Lymphoma_burkitts(Raji)14121.3
MedullaOblongata1074.6
OccipitalLobe1392.2
OlfactoryBulb1882.65
Ovary5055.75
Pancreas3256.25
PancreaticIslet5605.7
ParietalLobe1230.25
Pituitary4149.85
Placenta1373.25
Pons904.05
PrefrontalCortex2115.55
Prostate3052.45
Salivarygland3590.3
SkeletalMuscle1316.15
Skin2225.35
SmoothMuscle7427.25
Spinalcord2686.8
SubthalamicNucleus1182.95
SuperiorCervicalGanglion723.2
TemporalLobe1351.75
Testis827.4
TestisGermCell2915.7
TestisIntersitial2580.1
TestisLeydigCell2322.4
TestisSeminiferousTubule2241.7
Thalamus1542.95
Thymus1927.45
Thyroid3541.4
Tongue2372.15
Tonsil4908.3
Trachea1753.9
TrigeminalGanglion980.15
Uterus3379.45
UterusCorpus4259.3
WholeBlood4713.45
Wholebrain1175.55
colon2565.45
pineal_day4476.9
pineal_night3759.64
retina1936.3
small_intestine1697.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P8857
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.73 ± 0.49
Basal Forebrain5.23 ± 0.23
Basal Part of Pons4.96 ± 0.37
Cerebellar Cortex5.41 ± 0.25
Cerebellar Nuclei4.86 ± 0.66
Claustrum4.47 ± 0.67
Epithalamus5.15 ± 0.4
Frontal Lobe4.88 ± 0.41
Globus Pallidus5.09 ± 0.4
Hypothalamus5.05 ± 0.44
Insula5.06 ± 0.48
Limbic Lobe4.86 ± 0.47
Mesencephalon5.04 ± 0.46
Myelencephalon4.94 ± 0.45
Occipital Lobe5.32 ± 0.31
Parietal Lobe4.91 ± 0.45
Pontine Tegmentum4.99 ± 0.47
Striatum4.95 ± 0.48
Subthalamus5.13 ± 0.61
Temporal Lobe4.9 ± 0.39
Thalamus4.99 ± 0.47
White Matter5.61 ± 0.21
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rpl17CBCerebellum100
100
Rpl17CTXCerebral cortex100
100
Rpl17HIPHippocampal region100
100
Rpl17HPFHippocampal formation100
100
Rpl17HYHypothalamus100
100
Rpl17LSXLateral septal complex100
100
Rpl17MBMidbrain100
100
Rpl17MYMedulla100
100
Rpl17OLFOlfactory bulb100
100
Rpl17PPons100
100
Rpl17PALPallidum100
100
Rpl17RHPRetrohippocampal region100
100
Rpl17sAMYStriatum-like amygdalar nuclei100
100
Rpl17STRStriatum100
100
Rpl17STRdStriatum dorsal region100
100
Rpl17STRvStriatum ventral region100
100
Rpl17THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00003972 18 136 153 INPYMSSPCHIEMILTEK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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