AutismKB 2.0

Annotation Detail for RPL23A


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Basic Information Top
Gene Symbol:RPL23A ( FLJ27455,MDA20 )
Gene Full Name: ribosomal protein L23a
Band: 17q11.2
Quick LinksEntrez ID:6147; OMIM: 602326; Uniprot ID:RL23A_HUMAN; ENSEMBL ID: ENSG00000198242; HGNC ID: 10317
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body42 / 70761593
blastocyst107 / 623191716
fetus280 / 564012496
neonate15 / 31097482
infant3 / 23620127
juvenile18 / 55556323
adult1088 / 1939121561
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor9 / 12794703
bladder carcinoma13 / 17475743
breast (mammary gland) tumor54 / 94178573
cervical tumor14 / 34366407
chondrosarcoma224 / 828232704
colorectal tumor65 / 114246568
esophageal tumor0 / 172900 
gastrointestinal tumor157 / 1193691315
germ cell tumor130 / 263845492
glioma23 / 106883215
head and neck tumor16 / 136302117
kidney tumor58 / 68959841
leukemia30 / 95842313
liver tumor75 / 96359778
lung tumor102 / 103127989
lymphoma79 / 717551100
non-neoplasia12 / 97250123
normal1998 / 3360307594
ovarian tumor48 / 76682625
pancreatic tumor95 / 104616908
primitive neuroectodermal tumor of the CNS76 / 125680604
prostate cancer135 / 1026801314
retinoblastoma71 / 463561531
skin tumor148 / 1249491184
soft tissue/muscle tissue tumor153 / 1251911222
uterine tumor56 / 90257620
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue8 / 13106610
adrenal gland22 / 33197662
ascites96 / 400152399
bladder16 / 29757537
blood97 / 123478785
bone45 / 71655628
bone marrow48 / 48801983
brain154 / 1100989139
cervix16 / 48171332
connective tissue181 / 1492551212
ear28 / 162121727
embryonic tissue324 / 2157221501
esophagus0 / 202090 
eye283 / 2110541340
heart51 / 89626569
intestine122 / 234472520
kidney89 / 211777420
larynx0 / 241450 
liver138 / 207743664
lung339 / 3369741006
lymph61 / 442701377
lymph node55 / 91610600
mammary gland60 / 153271391
mouth8 / 67052119
muscle112 / 1077151039
nerve6 / 15768380
ovary69 / 102051676
pancreas139 / 214812647
parathyroid53 / 205392580
pharynx20 / 41328483
pituitary gland18 / 165851085
placenta122 / 280825434
prostate191 / 1893451008
salivary gland15 / 20155744
skin186 / 210574883
spleen23 / 53952426
stomach52 / 96619538
testis98 / 330442296
thymus17 / 81131209
thyroid4 / 4747384
tonsil237 / 1699913941
trachea1 / 5241319
umbilical cord15 / 136801096
uterus149 / 232878639
vascular44 / 51780849
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203012_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts13966.05
Adipocyte7337.55
AdrenalCortex6859.25
Adrenalgland5851.05
Amygdala3974.4
Appendix7478.55
AtrioventricularNode2969.65
BDCA4+_DentriticCells15366.35
Bonemarrow7286.95
BronchialEpithelialCells11334.75
CD105+_Endothelial10638.8
CD14+_Monocytes10448.8
CD19+_BCells(neg._sel.)20973.1
CD33+_Myeloid11132
CD34+20944.05
CD4+_Tcells14048.1
CD56+_NKCells17262.1
CD71+_EarlyErythroid6775.3
CD8+_Tcells10305.35
CardiacMyocytes7184.35
Caudatenucleus5246.3
Cerebellum2953.8
CerebellumPeduncles4895.15
CiliaryGanglion2871.5
CingulateCortex4317.55
Colorectaladenocarcinoma5808.05
DorsalRootGanglion3476.5
FetalThyroid8418.6
Fetalbrain7623.9
Fetalliver5007.8
Fetallung7466.85
GlobusPallidus2075.65
Heart8468.8
Hypothalamus7129.2
Kidney3752.1
Leukemia_chronicMyelogenousK-56211075.7
Leukemia_promyelocytic-HL-6014137.6
Leukemialymphoblastic(MOLT-4)13700.55
Liver7396.65
Lung6760.5
Lymphnode9687.55
Lymphoma_burkitts(Daudi)18999.85
Lymphoma_burkitts(Raji)13431.4
MedullaOblongata4567.35
OccipitalLobe3705.85
OlfactoryBulb6998
Ovary9324.65
Pancreas6793.45
PancreaticIslet9140.55
ParietalLobe4176.95
Pituitary10984.1
Placenta5036.8
Pons3476.2
PrefrontalCortex7957.55
Prostate10076.8
Salivarygland7703.9
SkeletalMuscle5140.35
Skin5223.15
SmoothMuscle9035.5
Spinalcord8476.6
SubthalamicNucleus3701.65
SuperiorCervicalGanglion3172.65
TemporalLobe4693.45
Testis4890.45
TestisGermCell6066.25
TestisIntersitial5387.35
TestisLeydigCell4765.2
TestisSeminiferousTubule4888.95
Thalamus5880.1
Thymus6317.35
Thyroid7044.65
Tongue7208.5
Tonsil10581.7
Trachea7092.55
TrigeminalGanglion3528.75
Uterus6784.85
UterusCorpus9166.75
WholeBlood14105.25
Wholebrain5349.1
colon7243.1
pineal_day5512.92
pineal_night5575.3
retina7249.525
small_intestine6468.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P132337
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala10.07 ± 0.48
Basal Forebrain10.14 ± 0.25
Basal Part of Pons9.59 ± 0.26
Cerebellar Cortex9.92 ± 0.15
Cerebellar Nuclei10.02 ± 0.4
Claustrum10.18 ± 0.4
Epithalamus9.69 ± 0.3
Frontal Lobe9.7 ± 0.28
Globus Pallidus10.65 ± 0.24
Hypothalamus9.87 ± 0.27
Insula9.76 ± 0.33
Limbic Lobe9.89 ± 0.42
Mesencephalon10.13 ± 0.36
Myelencephalon9.92 ± 0.42
Occipital Lobe10.3 ± 0.48
Parietal Lobe9.82 ± 0.31
Pontine Tegmentum9.94 ± 0.34
Striatum10.37 ± 0.44
Subthalamus9.74 ± 0.16
Temporal Lobe9.77 ± 0.27
Thalamus9.87 ± 0.31
White Matter10.83 ± 0.34
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00067597 10 79 88 FPLTTESAMK Peptide Atlas
RL23A_HUMAN_114 9 114 122 KLYDIDVAK PRIDE
RL23A_HUMAN_115 20 115 134 LYDIDVAKVNTLIRPDGEKK PRIDE
RL23A_HUMAN_123 11 123 133 VNTLIRPDGEK PRIDE
RL23A_HUMAN_139 13 139 151 LAPDYDALDVANK PRIDE
RL23A_HUMAN_139 17 139 155 LAPDYDALDVANKIGII PRIDE
RL23A_HUMAN_140 13 140 152 LAPDYDALDVANK PRIDE
RL23A_HUMAN_140 17 140 156 LAPDYDALDVANKIGII PRIDE
RL23A_HUMAN_57 6 57 62 QPKYPR PRIDE
RL23A_HUMAN_68 20 68 87 NKLDHYAIIKFPLTTESAMK PRIDE
RL23A_HUMAN_7 11 7 17 EAPAPPKAEAK PRIDE
RL23A_HUMAN_70 18 70 87 LDHYAIIKFPLTTESAMK PRIDE
RL23A_HUMAN_78 10 78 87 FPLTTESAMK PRIDE
RL23A_HUMAN_79 10 79 88 FPLTTESAMK PRIDE
RL23A_HUMAN_88 15 88 102 KIEDNNTLVFIVDVK PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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