AutismKB 2.0

Annotation Detail for RPL39


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Basic Information Top
Gene Symbol:RPL39 ( - )
Gene Full Name: ribosomal protein L39
Band: Xq24
Quick LinksEntrez ID:6170; OMIM: 601904; Uniprot ID:RL39_HUMAN; ENSEMBL ID: ENSG00000198918; HGNC ID: 10350
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body17 / 70761240
blastocyst154 / 623192471
fetus46 / 56401281
neonate3 / 3109796
infant2 / 2362084
juvenile6 / 55556107
adult353 / 1939121182
embryoid body1 / 7076114
blastocyst2 / 6231932
fetus12 / 56401221
neonate0 / 310970 
infant1 / 2362042
juvenile3 / 5555653
adult73 / 193912137
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma4 / 17475228
breast (mammary gland) tumor16 / 94178169
cervical tumor4 / 34366116
chondrosarcoma1 / 8282312
colorectal tumor13 / 114246113
esophageal tumor1 / 1729057
gastrointestinal tumor20 / 119369167
germ cell tumor24 / 26384590
glioma18 / 106883168
head and neck tumor12 / 13630288
kidney tumor14 / 68959203
leukemia21 / 95842219
liver tumor14 / 96359145
lung tumor13 / 103127126
lymphoma7 / 7175597
non-neoplasia1 / 9725010
normal888 / 3360307264
ovarian tumor16 / 76682208
pancreatic tumor15 / 104616143
primitive neuroectodermal tumor of the CNS14 / 125680111
prostate cancer97 / 102680944
retinoblastoma11 / 46356237
skin tumor16 / 124949128
soft tissue/muscle tissue tumor25 / 125191199
uterine tumor5 / 9025755
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor2 / 2638457
glioma2 / 10688318
head and neck tumor6 / 13630244
kidney tumor0 / 689590 
leukemia6 / 9584262
liver tumor3 / 9635931
lung tumor0 / 1031270 
lymphoma3 / 7175541
non-neoplasia0 / 972500 
normal69 / 336030720
ovarian tumor2 / 7668226
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer27 / 102680262
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue5 / 13106381
adrenal gland6 / 33197180
ascites2 / 4001549
bladder3 / 29757100
blood20 / 123478161
bone20 / 71655279
bone marrow33 / 48801676
brain36 / 110098932
cervix4 / 4817183
connective tissue1 / 1492556
ear2 / 16212123
embryonic tissue418 / 2157221937
esophagus1 / 2020949
eye28 / 211054132
heart23 / 89626256
intestine24 / 234472102
kidney18 / 21177784
larynx0 / 241450 
liver27 / 207743129
lung27 / 33697480
lymph3 / 4427067
lymph node11 / 91610120
mammary gland18 / 153271117
mouth11 / 67052164
muscle92 / 107715854
nerve0 / 157680 
ovary23 / 102051225
pancreas26 / 214812121
parathyroid2 / 2053997
pharynx5 / 41328120
pituitary gland2 / 16585120
placenta16 / 28082556
prostate120 / 189345633
salivary gland3 / 20155148
skin21 / 21057499
spleen9 / 53952166
stomach24 / 96619248
testis19 / 33044257
thymus5 / 8113161
thyroid4 / 4747384
tonsil7 / 16999411
trachea0 / 524130 
umbilical cord3 / 13680219
uterus25 / 232878107
vascular45 / 51780869
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites2 / 4001549
bladder0 / 297570 
blood3 / 12347824
bone6 / 7165583
bone marrow7 / 48801143
brain6 / 11009895
cervix0 / 481710 
connective tissue0 / 1492550 
ear3 / 16212185
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye14 / 21105466
heart3 / 8962633
intestine5 / 23447221
kidney0 / 2117770 
larynx1 / 2414541
liver9 / 20774343
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth1 / 6705214
muscle5 / 10771546
nerve0 / 157680 
ovary5 / 10205148
pancreas3 / 21481213
parathyroid1 / 2053948
pharynx4 / 4132896
pituitary gland0 / 165850 
placenta1 / 2808253
prostate30 / 189345158
salivary gland0 / 201550 
skin3 / 21057414
spleen1 / 5395218
stomach1 / 9661910
testis3 / 3304429
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus5 / 23287821
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 208695_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts8705.45
Adipocyte5459.05
AdrenalCortex5532.05
Adrenalgland5368.9
Amygdala2119.35
Appendix6702.3
AtrioventricularNode1713.1
BDCA4+_DentriticCells7714.55
Bonemarrow5101.85
BronchialEpithelialCells7916.95
CD105+_Endothelial7851.3
CD14+_Monocytes8931.75
CD19+_BCells(neg._sel.)9136.5
CD33+_Myeloid10289.15
CD34+9820.15
CD4+_Tcells10942.55
CD56+_NKCells8466.9
CD71+_EarlyErythroid3612.5
CD8+_Tcells9986.65
CardiacMyocytes5773
Caudatenucleus2172.95
Cerebellum1282.4
CerebellumPeduncles2141.25
CiliaryGanglion1213.3
CingulateCortex1358.5
Colorectaladenocarcinoma6399.6
DorsalRootGanglion2158.2
FetalThyroid6828.05
Fetalbrain8462.65
Fetalliver4704.95
Fetallung6349
GlobusPallidus695.45
Heart3266.65
Hypothalamus3025.55
Kidney2732.95
Leukemia_chronicMyelogenousK-5628516.85
Leukemia_promyelocytic-HL-608330
Leukemialymphoblastic(MOLT-4)6690.45
Liver4533
Lung5625.4
Lymphnode8771.4
Lymphoma_burkitts(Daudi)9325.25
Lymphoma_burkitts(Raji)11166.35
MedullaOblongata1583.05
OccipitalLobe2023
OlfactoryBulb4408.8
Ovary5241.95
Pancreas6315.55
PancreaticIslet6488.8
ParietalLobe1101.75
Pituitary6002.6
Placenta3630.7
Pons1077.35
PrefrontalCortex4222.65
Prostate6799.15
Salivarygland7129.35
SkeletalMuscle2708.45
Skin4367.75
SmoothMuscle7441.45
Spinalcord4148.85
SubthalamicNucleus1025.85
SuperiorCervicalGanglion1284.55
TemporalLobe1855.9
Testis2752.2
TestisGermCell3500.3
TestisIntersitial1763.45
TestisLeydigCell1587.35
TestisSeminiferousTubule2718.65
Thalamus2036.4
Thymus6476.95
Thyroid6818.35
Tongue5405.1
Tonsil6964.3
Trachea4942.25
TrigeminalGanglion1760.9
Uterus5588.15
UterusCorpus4903.75
WholeBlood10596.95
Wholebrain2842.2
colon6698.15
pineal_day4572.52
pineal_night3883.6
retina4673.925
small_intestine8814.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_4114_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala10.96 ± 0.23
Basal Forebrain11.06 ± 0.16
Basal Part of Pons10.83 ± 0.23
Cerebellar Cortex10.84 ± 0.2
Cerebellar Nuclei11.05 ± 0.37
Claustrum10.74 ± 0.35
Epithalamus10.81 ± 0.29
Frontal Lobe10.86 ± 0.31
Globus Pallidus11.94 ± 0.17
Hypothalamus11.14 ± 0.33
Insula10.95 ± 0.26
Limbic Lobe10.72 ± 0.32
Mesencephalon11.01 ± 0.38
Myelencephalon10.86 ± 0.32
Occipital Lobe10.57 ± 0.28
Parietal Lobe10.82 ± 0.29
Pontine Tegmentum10.95 ± 0.32
Striatum11.16 ± 0.29
Subthalamus11.05 ± 0.09
Temporal Lobe10.91 ± 0.28
Thalamus10.81 ± 0.29
White Matter11.54 ± 0.39
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00402033 10 19 28 QNRPIPQWIR Peptide Atlas
RL39_HUMAN_1 7 1 7 SSHKTFR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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