AutismKB 2.0

Annotation Detail for RPS3A


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Basic Information Top
Gene Symbol:RPS3A ( FTE1,MFTL,MGC23240 )
Gene Full Name: ribosomal protein S3A
Band: 4q31.3
Quick LinksEntrez ID:6189; OMIM: 180478; Uniprot ID:RS3A_HUMAN; ENSEMBL ID: ENSG00000145425; HGNC ID: 10421
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body137 / 707611936
blastocyst169 / 623192711
fetus296 / 564012524
neonate58 / 310971865
infant6 / 23620254
juvenile55 / 55556989
adult1619 / 1939121834
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor20 / 127941563
bladder carcinoma8 / 17475457
breast (mammary gland) tumor124 / 941781316
cervical tumor61 / 343661775
chondrosarcoma113 / 828231364
colorectal tumor214 / 1142461873
esophageal tumor4 / 17290231
gastrointestinal tumor174 / 1193691457
germ cell tumor405 / 2638451534
glioma77 / 106883720
head and neck tumor68 / 136302498
kidney tumor97 / 689591406
leukemia50 / 95842521
liver tumor173 / 963591795
lung tumor363 / 1031273519
lymphoma329 / 717554585
non-neoplasia33 / 97250339
normal2946 / 3360307876
ovarian tumor191 / 766822490
pancreatic tumor139 / 1046161328
primitive neuroectodermal tumor of the CNS326 / 1256802593
prostate cancer187 / 1026801821
retinoblastoma287 / 463566191
skin tumor325 / 1249492601
soft tissue/muscle tissue tumor410 / 1251913274
uterine tumor221 / 902572448
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue24 / 131061831
adrenal gland28 / 33197843
ascites62 / 400151549
bladder20 / 29757672
blood104 / 123478842
bone122 / 716551702
bone marrow66 / 488011352
brain501 / 1100989455
cervix63 / 481711307
connective tissue109 / 149255730
ear17 / 162121048
embryonic tissue550 / 2157222549
esophagus4 / 20209197
eye468 / 2110542217
heart75 / 89626836
intestine274 / 2344721168
kidney109 / 211777514
larynx9 / 24145372
liver224 / 2077431078
lung446 / 3369741323
lymph274 / 442706189
lymph node56 / 91610611
mammary gland133 / 153271867
mouth21 / 67052313
muscle241 / 1077152237
nerve10 / 15768634
ovary273 / 1020512675
pancreas546 / 2148122541
parathyroid5 / 20539243
pharynx79 / 413281911
pituitary gland10 / 16585602
placenta291 / 2808251036
prostate256 / 1893451352
salivary gland29 / 201551438
skin350 / 2105741662
spleen32 / 53952593
stomach157 / 966191624
testis96 / 330442290
thymus37 / 81131456
thyroid31 / 47473653
tonsil343 / 1699920177
trachea2 / 5241338
umbilical cord57 / 136804166
uterus435 / 2328781867
vascular43 / 51780830
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201257_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts14922.5
Adipocyte7790.65
AdrenalCortex6381.45
Adrenalgland3037.8
Amygdala5919.75
Appendix9889.4
AtrioventricularNode3120.35
BDCA4+_DentriticCells13515
Bonemarrow5333.85
BronchialEpithelialCells12934.45
CD105+_Endothelial12841.1
CD14+_Monocytes12619.2
CD19+_BCells(neg._sel.)14671.05
CD33+_Myeloid12847.9
CD34+17499.05
CD4+_Tcells17254.85
CD56+_NKCells13815.35
CD71+_EarlyErythroid8830.55
CD8+_Tcells18344.25
CardiacMyocytes7710.85
Caudatenucleus4648.2
Cerebellum2240.95
CerebellumPeduncles2727.45
CiliaryGanglion2650.7
CingulateCortex2699.55
Colorectaladenocarcinoma4271.25
DorsalRootGanglion3812.55
FetalThyroid11337.3
Fetalbrain10793.15
Fetalliver6884.6
Fetallung9789.7
GlobusPallidus2076.4
Heart1791.45
Hypothalamus6667.7
Kidney4419.5
Leukemia_chronicMyelogenousK-5629012.35
Leukemia_promyelocytic-HL-6012947.7
Leukemialymphoblastic(MOLT-4)12260.15
Liver3697.1
Lung6922.2
Lymphnode11114
Lymphoma_burkitts(Daudi)19352.2
Lymphoma_burkitts(Raji)13046.15
MedullaOblongata3784.3
OccipitalLobe4485
OlfactoryBulb6708.1
Ovary10071.25
Pancreas6426.15
PancreaticIslet10234.5
ParietalLobe2673.85
Pituitary12399.6
Placenta4702.5
Pons3462.45
PrefrontalCortex5177.6
Prostate8465.05
Salivarygland8312.6
SkeletalMuscle3303
Skin6104.75
SmoothMuscle11272.3
Spinalcord6054.25
SubthalamicNucleus3390.45
SuperiorCervicalGanglion2695.65
TemporalLobe5063.1
Testis3742.1
TestisGermCell7267.5
TestisIntersitial6561.9
TestisLeydigCell6458.15
TestisSeminiferousTubule5408.95
Thalamus4412.05
Thymus8258.05
Thyroid11140.6
Tongue7831.25
Tonsil10089.75
Trachea6428
TrigeminalGanglion4952.6
Uterus10345.85
UterusCorpus12525.7
WholeBlood11631.4
Wholebrain4100.5
colon7445.7
pineal_day8202.96
pineal_night7815.64
retina7210.15
small_intestine6340
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P383999
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.65 ± 0.43
Basal Forebrain10.01 ± 0.04
Basal Part of Pons9.84 ± 0.52
Cerebellar Cortex10.01 ± 0.35
Cerebellar Nuclei9.61 ± 0.56
Claustrum9.12 ± 0.85
Epithalamus10.09 ± 0.27
Frontal Lobe9.78 ± 0.47
Globus Pallidus10.37 ± 0.21
Hypothalamus10.06 ± 0.33
Insula9.83 ± 0.42
Limbic Lobe9.39 ± 0.51
Mesencephalon9.66 ± 0.53
Myelencephalon9.66 ± 0.49
Occipital Lobe9.04 ± 0.57
Parietal Lobe9.62 ± 0.42
Pontine Tegmentum9.72 ± 0.41
Striatum9.46 ± 0.42
Subthalamus9.8 ± 0.23
Temporal Lobe9.81 ± 0.39
Thalamus9.6 ± 0.46
White Matter10.16 ± 0.66
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rps3aCBCerebellum38.24
81.01
Rps3aCTXCerebral cortex100
100
Rps3aHIPHippocampal region100
100
Rps3aHPFHippocampal formation100
100
Rps3aHYHypothalamus100
100
Rps3aLSXLateral septal complex100
100
Rps3aMBMidbrain100
100
Rps3aMYMedulla66.32
100
Rps3aOLFOlfactory bulb100
100
Rps3aPPons81.35
100
Rps3aPALPallidum100
100
Rps3aRHPRetrohippocampal region100
100
Rps3asAMYStriatum-like amygdalar nuclei100
100
Rps3aSTRStriatum100
100
Rps3aSTRdStriatum dorsal region100
100
Rps3aSTRvStriatum ventral region100
100
Rps3aTHThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00000233 14 200 213 ACQSIYPLHDVFVR Peptide Atlas
RS3A_HUMAN_1 7 1 7 AVGKNKR PRIDE
RS3A_HUMAN_128 8 128 135 TTDGYLLR PRIDE
RS3A_HUMAN_136 8 136 143 LFCVGFTK PRIDE
RS3A_HUMAN_167 7 167 173 MMEIMTR PRIDE
RS3A_HUMAN_187 12 187 198 LIPDSIGKDIEK PRIDE
RS3A_HUMAN_199 14 199 212 ACQSIYPLHDVFVR PRIDE
RS3A_HUMAN_2 7 2 8 AVGKNKR PRIDE
RS3A_HUMAN_220 32 220 251 PKFELGKLMELHGEGSSSGKATGDETGAKVER PRIDE
RS3A_HUMAN_227 13 227 239 LMELHGEGSSSGK PRIDE
RS3A_HUMAN_227 25 227 251 LMELHGEGSSSGKATGDETGAKVER PRIDE
RS3A_HUMAN_252 12 252 263 ADGYEPPVQESV PRIDE
RS3A_HUMAN_253 12 253 264 ADGYEPPVQESV PRIDE
RS3A_HUMAN_34 8 34 41 APAMFNIR PRIDE
RS3A_HUMAN_42 9 42 50 NIGKTLVTR PRIDE
RS3A_HUMAN_52 14 52 65 TQGTKIASDGLKGR PRIDE
RS3A_HUMAN_65 17 65 81 VFEVSLADLQNDEVAFR PRIDE
RS3A_HUMAN_65 18 65 82 VFEVSLADLQNDEVAFRK PRIDE
RS3A_HUMAN_85 9 85 93 LITEDVQGK PRIDE
RS3A_HUMAN_94 13 94 106 NCLTNFHGMDLTR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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