AutismKB 2.0

Annotation Detail for RPS7


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Basic Information Top
Gene Symbol:RPS7 ( DBA8 )
Gene Full Name: ribosomal protein S7
Band: 2p25.3
Quick LinksEntrez ID:6201; OMIM: 603658; Uniprot ID:RS7_HUMAN; ENSEMBL ID: ENSG00000171863; HGNC ID: 10440
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body15 / 70761211
blastocyst33 / 62319529
fetus96 / 564012170
neonate22 / 31097707
infant4 / 23620169
juvenile3 / 5555653
adult401 / 1939121206
embryoid body21 / 70761296
blastocyst10 / 62319160
fetus109 / 564012193
neonate20 / 31097643
infant3 / 23620127
juvenile37 / 55556665
adult261 / 1939121134
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus1 / 5640121
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult9 / 19391214
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor5 / 12794390
bladder carcinoma1 / 1747557
breast (mammary gland) tumor36 / 94178382
cervical tumor4 / 34366116
chondrosarcoma23 / 82823277
colorectal tumor20 / 114246175
esophageal tumor1 / 1729057
gastrointestinal tumor21 / 119369175
germ cell tumor42 / 263845159
glioma10 / 10688393
head and neck tumor29 / 136302212
kidney tumor22 / 68959319
leukemia9 / 9584293
liver tumor25 / 96359259
lung tumor40 / 103127387
lymphoma29 / 71755404
non-neoplasia8 / 9725082
normal703 / 3360307209
ovarian tumor12 / 76682156
pancreatic tumor27 / 104616258
primitive neuroectodermal tumor of the CNS21 / 125680167
prostate cancer61 / 102680594
retinoblastoma22 / 46356474
skin tumor44 / 124949352
soft tissue/muscle tissue tumor36 / 125191287
uterine tumor11 / 90257121
adrenal tumor3 / 12794234
bladder carcinoma5 / 17475286
breast (mammary gland) tumor10 / 94178106
cervical tumor4 / 34366116
chondrosarcoma2 / 8282324
colorectal tumor37 / 114246323
esophageal tumor1 / 1729057
gastrointestinal tumor49 / 119369410
germ cell tumor29 / 263845109
glioma4 / 10688337
head and neck tumor6 / 13630244
kidney tumor6 / 6895987
leukemia66 / 95842688
liver tumor24 / 96359249
lung tumor21 / 103127203
lymphoma25 / 71755348
non-neoplasia4 / 9725041
normal478 / 3360307142
ovarian tumor12 / 76682156
pancreatic tumor15 / 104616143
primitive neuroectodermal tumor of the CNS23 / 125680183
prostate cancer47 / 102680457
retinoblastoma5 / 46356107
skin tumor23 / 124949184
soft tissue/muscle tissue tumor16 / 125191127
uterine tumor27 / 90257299
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor1 / 1363027
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal6 / 33603071
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer4 / 10268038
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland10 / 33197301
ascites4 / 4001599
bladder6 / 29757201
blood20 / 123478161
bone25 / 71655348
bone marrow8 / 48801163
brain64 / 110098958
cervix5 / 48171103
connective tissue15 / 149255100
ear3 / 16212185
embryonic tissue139 / 215722644
esophagus1 / 2020949
eye70 / 211054331
heart17 / 89626189
intestine40 / 234472170
kidney28 / 211777132
larynx1 / 2414541
liver41 / 207743197
lung100 / 336974296
lymph19 / 44270429
lymph node9 / 9161098
mammary gland37 / 153271241
mouth3 / 6705244
muscle33 / 107715306
nerve2 / 15768126
ovary20 / 102051195
pancreas130 / 214812605
parathyroid4 / 20539194
pharynx4 / 4132896
pituitary gland6 / 16585361
placenta42 / 280825149
prostate80 / 189345422
salivary gland6 / 20155297
skin56 / 210574265
spleen8 / 53952148
stomach15 / 96619155
testis34 / 330442102
thymus3 / 8113136
thyroid18 / 47473379
tonsil12 / 16999705
trachea0 / 524130 
umbilical cord22 / 136801608
uterus21 / 23287890
vascular18 / 51780347
adipose tissue5 / 13106381
adrenal gland8 / 33197240
ascites27 / 40015674
bladder6 / 29757201
blood47 / 123478380
bone8 / 71655111
bone marrow35 / 48801717
brain79 / 110098971
cervix4 / 4817183
connective tissue3 / 14925520
ear8 / 16212493
embryonic tissue76 / 215722352
esophagus1 / 2020949
eye37 / 211054175
heart37 / 89626412
intestine45 / 234472191
kidney29 / 211777136
larynx0 / 241450 
liver39 / 207743187
lung49 / 336974145
lymph6 / 44270135
lymph node32 / 91610349
mammary gland10 / 15327165
mouth3 / 6705244
muscle11 / 107715102
nerve0 / 157680 
ovary18 / 102051176
pancreas36 / 214812167
parathyroid1 / 2053948
pharynx7 / 41328169
pituitary gland3 / 16585180
placenta22 / 28082578
prostate56 / 189345295
salivary gland1 / 2015549
skin34 / 210574161
spleen9 / 53952166
stomach22 / 96619227
testis39 / 330442118
thymus16 / 81131197
thyroid3 / 4747363
tonsil5 / 16999294
trachea2 / 5241338
umbilical cord20 / 136801461
uterus45 / 232878193
vascular18 / 51780347
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone2 / 7165527
bone marrow2 / 4880140
brain3 / 11009892
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine1 / 2344724
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth1 / 6705214
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate3 / 18934515
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis3 / 3304429
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213941_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts7441.35
Adipocyte2606.3
AdrenalCortex2155.6
Adrenalgland1009.35
Amygdala1309.45
Appendix2503.2
AtrioventricularNode657.75
BDCA4+_DentriticCells6900.1
Bonemarrow1586.55
BronchialEpithelialCells6066.7
CD105+_Endothelial6507.45
CD14+_Monocytes5169.05
CD19+_BCells(neg._sel.)8762.5
CD33+_Myeloid6611.85
CD34+9653.45
CD4+_Tcells6998.7
CD56+_NKCells7263.6
CD71+_EarlyErythroid2834.65
CD8+_Tcells6920.8
CardiacMyocytes2965.4
Caudatenucleus982.75
Cerebellum428.6
CerebellumPeduncles1405.45
CiliaryGanglion580.95
CingulateCortex931
Colorectaladenocarcinoma4846.65
DorsalRootGanglion860.05
FetalThyroid3582.15
Fetalbrain1927.25
Fetalliver1924.1
Fetallung3725.6
GlobusPallidus662.4
Heart175.2
Hypothalamus1806.65
Kidney902.35
Leukemia_chronicMyelogenousK-5625711.35
Leukemia_promyelocytic-HL-607102.9
Leukemialymphoblastic(MOLT-4)4660.05
Liver489.45
Lung2030.6
Lymphnode4291.65
Lymphoma_burkitts(Daudi)9355.85
Lymphoma_burkitts(Raji)9420.15
MedullaOblongata956.35
OccipitalLobe900.15
OlfactoryBulb1988.55
Ovary3380.6
Pancreas3859.15
PancreaticIslet3861.25
ParietalLobe627.7
Pituitary3509.55
Placenta2324.95
Pons690.1
PrefrontalCortex2148.85
Prostate3391.6
Salivarygland3463.6
SkeletalMuscle478.35
Skin2174.1
SmoothMuscle4887.4
Spinalcord1396.95
SubthalamicNucleus811.5
SuperiorCervicalGanglion237.05
TemporalLobe1186.3
Testis1188.3
TestisGermCell2502.45
TestisIntersitial2835.85
TestisLeydigCell1817.2
TestisSeminiferousTubule2118.25
Thalamus1032.8
Thymus2815.75
Thyroid4551.7
Tongue3273.4
Tonsil3928.05
Trachea1502.2
TrigeminalGanglion807.8
Uterus3650.55
UterusCorpus2615.95
WholeBlood4244.15
Wholebrain1128.75
colon2589.4
pineal_day3789.32
pineal_night2915.62
retina1790.475
small_intestine2576.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_4096_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala12.61 ± 0.28
Basal Forebrain12.66 ± 0.09
Basal Part of Pons12.57 ± 0.31
Cerebellar Cortex12.66 ± 0.2
Cerebellar Nuclei12.55 ± 0.32
Claustrum12.11 ± 0.53
Epithalamus12.48 ± 0.39
Frontal Lobe12.43 ± 0.33
Globus Pallidus13.09 ± 0.2
Hypothalamus12.51 ± 0.55
Insula12.54 ± 0.34
Limbic Lobe12.3 ± 0.33
Mesencephalon12.49 ± 0.41
Myelencephalon12.44 ± 0.35
Occipital Lobe12.29 ± 0.29
Parietal Lobe12.45 ± 0.35
Pontine Tegmentum12.48 ± 0.28
Striatum12.53 ± 0.34
Subthalamus12.63 ± 0.11
Temporal Lobe12.51 ± 0.32
Thalamus12.4 ± 0.25
White Matter12.8 ± 0.38
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rps7CBCerebellum29.96
66.86
Rps7CTXCerebral cortex100
100
Rps7HIPHippocampal region100
100
Rps7HPFHippocampal formation100
100
Rps7HYHypothalamus100
100
Rps7LSXLateral septal complex94.92
99.92
Rps7MBMidbrain78.39
100
Rps7MYMedulla66.12
100
Rps7OLFOlfactory bulb92.59
100
Rps7PPons74.14
100
Rps7PALPallidum79.12
100
Rps7RHPRetrohippocampal region100
100
Rps7sAMYStriatum-like amygdalar nuclei100
100
Rps7STRStriatum67.61
72.32
Rps7STRdStriatum dorsal region43.11
43.09
Rps7STRvStriatum ventral region96.51
91.99
Rps7THThalamus66.07
82.99
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00004114 30 8 37 IVKPNGEKPDEFESGISQALLELEMNSDLK Peptide Atlas
RS7_HUMAN_0 0 0 0 AIIIFVPVPQLK PRIDE
RS7_HUMAN_1 41 1 41 MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLR PRIDE
RS7_HUMAN_100 7 100 106 ILPKPTR PRIDE
RS7_HUMAN_120 22 120 141 TLTAVHDAILEDLVFPSEIVGK PRIDE
RS7_HUMAN_120 23 120 142 TLTAVHDAILEDLVFPSEIVGKR PRIDE
RS7_HUMAN_121 23 121 143 TLTAVHDAILEDLVFPSEIVGKR PRIDE
RS7_HUMAN_133 11 133 143 LVFPSEIVGKR PRIDE
RS7_HUMAN_155 23 155 177 VHLDKAQQNNVEHKVETFSGVYK PRIDE
RS7_HUMAN_169 9 169 177 VETFSGVYK PRIDE
RS7_HUMAN_170 9 170 178 VETFSGVYK PRIDE
RS7_HUMAN_179 15 179 193 LTGKDVNFEFPEFQL PRIDE
RS7_HUMAN_183 11 183 193 DVNFEFPEFQL PRIDE
RS7_HUMAN_41 17 41 57 ELNITAAKEIEVGGGRK PRIDE
RS7_HUMAN_57 13 57 69 KAIIIFVPVPQLK PRIDE
RS7_HUMAN_58 12 58 69 AIIIFVPVPQLK PRIDE
RS7_HUMAN_7 30 7 36 IVKPNGEKPDEFESGISQALLELEMNSDLK PRIDE
RS7_HUMAN_7 34 7 40 IVKPNGEKPDEFESGISQALLELEMNSDLKAQLR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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