AutismKB 2.0

Annotation Detail for RPS15A


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Basic Information Top
Gene Symbol:RPS15A ( FLJ27457,MGC111208,S15a )
Gene Full Name: ribosomal protein S15a
Band: 16p12.3
Quick LinksEntrez ID:6210; OMIM: 603674; Uniprot ID:RS15A_HUMAN; ENSEMBL ID: ENSG00000134419; HGNC ID: 10389
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body43 / 70761607
blastocyst140 / 623192246
fetus113 / 564012200
neonate24 / 31097771
infant8 / 23620338
juvenile11 / 55556197
adult561 / 1939121289
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma4 / 17475228
breast (mammary gland) tumor38 / 94178403
cervical tumor16 / 34366465
chondrosarcoma10 / 82823120
colorectal tumor25 / 114246218
esophageal tumor1 / 1729057
gastrointestinal tumor69 / 119369578
germ cell tumor30 / 263845113
glioma34 / 106883318
head and neck tumor95 / 136302696
kidney tumor14 / 68959203
leukemia32 / 95842333
liver tumor80 / 96359830
lung tumor25 / 103127242
lymphoma23 / 71755320
non-neoplasia7 / 9725071
normal1110 / 3360307330
ovarian tumor21 / 76682273
pancreatic tumor33 / 104616315
primitive neuroectodermal tumor of the CNS36 / 125680286
prostate cancer75 / 102680730
retinoblastoma23 / 46356496
skin tumor22 / 124949176
soft tissue/muscle tissue tumor57 / 125191455
uterine tumor12 / 90257132
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland4 / 33197120
ascites15 / 40015374
bladder7 / 29757235
blood37 / 123478299
bone26 / 71655362
bone marrow27 / 48801553
brain98 / 110098989
cervix21 / 48171435
connective tissue18 / 149255120
ear12 / 16212740
embryonic tissue483 / 2157222238
esophagus2 / 2020998
eye70 / 211054331
heart36 / 89626401
intestine44 / 234472187
kidney35 / 211777165
larynx0 / 241450 
liver117 / 207743563
lung71 / 336974210
lymph8 / 44270180
lymph node18 / 91610196
mammary gland41 / 153271267
mouth74 / 670521103
muscle53 / 107715492
nerve3 / 15768190
ovary27 / 102051264
pancreas44 / 214812204
parathyroid4 / 20539194
pharynx8 / 41328193
pituitary gland9 / 16585542
placenta29 / 280825103
prostate95 / 189345501
salivary gland5 / 20155248
skin32 / 210574151
spleen6 / 53952111
stomach61 / 96619631
testis27 / 33044281
thymus13 / 81131160
thyroid39 / 47473821
tonsil20 / 169991176
trachea3 / 5241357
umbilical cord24 / 136801754
uterus35 / 232878150
vascular31 / 51780598
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 200781_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts9430.25
Adipocyte3341.7
AdrenalCortex3152
Adrenalgland2881.3
Amygdala891.4
Appendix5131.75
AtrioventricularNode1252.6
BDCA4+_DentriticCells9715.35
Bonemarrow3420.3
BronchialEpithelialCells8010.35
CD105+_Endothelial10600.55
CD14+_Monocytes7760.2
CD19+_BCells(neg._sel.)12234.85
CD33+_Myeloid7514.05
CD34+12965.9
CD4+_Tcells15185.1
CD56+_NKCells8905.15
CD71+_EarlyErythroid4856.5
CD8+_Tcells12683.6
CardiacMyocytes4489.1
Caudatenucleus829.05
Cerebellum830.9
CerebellumPeduncles1789.05
CiliaryGanglion987.7
CingulateCortex774.9
Colorectaladenocarcinoma2400.6
DorsalRootGanglion1255.5
FetalThyroid4838.7
Fetalbrain3488.45
Fetalliver3021.35
Fetallung5387.55
GlobusPallidus375.9
Heart1480.4
Hypothalamus1797.1
Kidney1640.25
Leukemia_chronicMyelogenousK-5627600.15
Leukemia_promyelocytic-HL-609071.25
Leukemialymphoblastic(MOLT-4)6966.2
Liver1889.55
Lung4626.1
Lymphnode7182.4
Lymphoma_burkitts(Daudi)13156.75
Lymphoma_burkitts(Raji)10288.85
MedullaOblongata696.4
OccipitalLobe818.25
OlfactoryBulb2812.2
Ovary4560.45
Pancreas3122.25
PancreaticIslet4973.65
ParietalLobe551.45
Pituitary3247.85
Placenta2909.9
Pons511.15
PrefrontalCortex1181.2
Prostate5435.35
Salivarygland5615.75
SkeletalMuscle2238.55
Skin3180.15
SmoothMuscle6780.4
Spinalcord2540.55
SubthalamicNucleus503.25
SuperiorCervicalGanglion736.55
TemporalLobe807.4
Testis2690.3
TestisGermCell2607.75
TestisIntersitial2685.35
TestisLeydigCell1857.8
TestisSeminiferousTubule1484.6
Thalamus1089.75
Thymus6541.25
Thyroid4414.3
Tongue3433.2
Tonsil5694.5
Trachea3196.1
TrigeminalGanglion1111.3
Uterus4900.35
UterusCorpus5314.25
WholeBlood6818.25
Wholebrain1550.4
colon4107.15
pineal_day2932.56
pineal_night2929.5
retina3375.45
small_intestine5228.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P221366
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala11.81 ± 0.26
Basal Forebrain11.98 ± 0.15
Basal Part of Pons11.65 ± 0.31
Cerebellar Cortex11.97 ± 0.23
Cerebellar Nuclei11.93 ± 0.37
Claustrum11.32 ± 0.55
Epithalamus11.94 ± 0.35
Frontal Lobe11.7 ± 0.4
Globus Pallidus12.59 ± 0.16
Hypothalamus11.92 ± 0.49
Insula11.78 ± 0.34
Limbic Lobe11.52 ± 0.38
Mesencephalon11.88 ± 0.45
Myelencephalon11.75 ± 0.38
Occipital Lobe11.55 ± 0.26
Parietal Lobe11.71 ± 0.33
Pontine Tegmentum11.83 ± 0.3
Striatum11.97 ± 0.41
Subthalamus11.88 ± 0.07
Temporal Lobe11.77 ± 0.33
Thalamus11.73 ± 0.29
White Matter12.54 ± 0.55
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rps15aCBCerebellum27.35
31.75
Rps15aCTXCerebral cortex63.7
54.99
Rps15aHIPHippocampal region91.36
100
Rps15aHPFHippocampal formation82.48
100
Rps15aHYHypothalamus56.01
57.01
Rps15aLSXLateral septal complex42.62
36.48
Rps15aMBMidbrain49.88
51.97
Rps15aMYMedulla33.77
43.48
Rps15aOLFOlfactory bulb61.21
62.47
Rps15aPPons39.4
46
Rps15aPALPallidum39.27
43.09
Rps15aRHPRetrohippocampal region68.11
64.31
Rps15asAMYStriatum-like amygdalar nuclei62.61
56.2
Rps15aSTRStriatum26.98
24.92
Rps15aSTRdStriatum dorsal region16.89
17.16
Rps15aSTRvStriatum ventral region29.52
23.05
Rps15aTHThalamus24.33
25.8
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00001040 7 72 78 CGVISPR Peptide Atlas
RS15A_HUMAN_0 0 0 0 HGYIGEFEIIDDHR PRIDE
RS15A_HUMAN_0 0 0 0 IVVNLTGR PRIDE
RS15A_HUMAN_101 16 101 116 IVLTTSAGIMDHEEAR PRIDE
RS15A_HUMAN_104 13 104 116 TTSAGIMDHEEAR PRIDE
RS15A_HUMAN_3 9 3 11 MNVLADALK PRIDE
RS15A_HUMAN_36 7 36 42 FLTVMMK PRIDE
RS15A_HUMAN_43 14 43 56 HGYIGEFEIIDDHR PRIDE
RS15A_HUMAN_60 8 60 67 IVVNLTGR PRIDE
RS15A_HUMAN_78 19 78 96 FDVQLKDLEKWQNNLLPSR PRIDE
RS15A_HUMAN_84 13 84 96 DLEKWQNNLLPSR PRIDE
RS15A_HUMAN_88 9 88 96 WQNNLLPSR PRIDE
RS15A_HUMAN_97 20 97 116 QFGFIVLTTSAGIMDHEEAR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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