AutismKB 2.0

Annotation Detail for RPS16


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Basic Information Top
Gene Symbol:RPS16 ( - )
Gene Full Name: ribosomal protein S16
Band: 19q13.1
Quick LinksEntrez ID:6217; OMIM: 603675; Uniprot ID:RS16_HUMAN; ENSEMBL ID: ENSG00000105193; HGNC ID: 10396
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body38 / 70761537
blastocyst95 / 623191524
fetus130 / 564012230
neonate21 / 31097675
infant4 / 23620169
juvenile10 / 55556179
adult494 / 1939121254
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor6 / 12794468
bladder carcinoma2 / 17475114
breast (mammary gland) tumor37 / 94178392
cervical tumor23 / 34366669
chondrosarcoma12 / 82823144
colorectal tumor35 / 114246306
esophageal tumor5 / 17290289
gastrointestinal tumor45 / 119369376
germ cell tumor83 / 263845314
glioma37 / 106883346
head and neck tumor39 / 136302286
kidney tumor21 / 68959304
leukemia25 / 95842260
liver tumor56 / 96359581
lung tumor45 / 103127436
lymphoma45 / 71755627
non-neoplasia15 / 97250154
normal1038 / 3360307308
ovarian tumor124 / 766821617
pancreatic tumor448 / 1046164282
primitive neuroectodermal tumor of the CNS48 / 125680381
prostate cancer69 / 102680671
retinoblastoma31 / 46356668
skin tumor103 / 124949824
soft tissue/muscle tissue tumor68 / 125191543
uterine tumor138 / 902571528
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue4 / 13106305
adrenal gland12 / 33197361
ascites14 / 40015349
bladder6 / 29757201
blood28 / 123478226
bone28 / 71655390
bone marrow28 / 48801573
brain193 / 1100989175
cervix27 / 48171560
connective tissue14 / 14925593
ear5 / 16212308
embryonic tissue297 / 2157221376
esophagus5 / 20209247
eye73 / 211054345
heart72 / 89626803
intestine100 / 234472426
kidney39 / 211777184
larynx4 / 24145165
liver84 / 207743404
lung114 / 336974338
lymph31 / 44270700
lymph node17 / 91610185
mammary gland42 / 153271274
mouth13 / 67052193
muscle105 / 107715974
nerve0 / 157680 
ovary141 / 1020511381
pancreas456 / 2148122122
parathyroid4 / 20539194
pharynx3 / 4132872
pituitary gland12 / 16585723
placenta78 / 280825277
prostate101 / 189345533
salivary gland11 / 20155545
skin109 / 210574517
spleen36 / 53952667
stomach36 / 96619372
testis18 / 33044254
thymus18 / 81131221
thyroid11 / 47473231
tonsil21 / 169991235
trachea6 / 52413114
umbilical cord21 / 136801535
uterus192 / 232878824
vascular16 / 51780308
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201258_at
Cell line Expression level Expression bar
721_B_lymphoblasts6530.7
Adipocyte3616.3
AdrenalCortex2630.8
Adrenalgland1794.8
Amygdala1088.5
Appendix3513.7
AtrioventricularNode992.05
BDCA4+_DentriticCells7161.95
Bonemarrow2771.4
BronchialEpithelialCells6369.05
CD105+_Endothelial5959.8
CD14+_Monocytes5140.4
CD19+_BCells(neg._sel.)7570.2
CD33+_Myeloid6328.05
CD34+8204.65
CD4+_Tcells8780.6
CD56+_NKCells6767.7
CD71+_EarlyErythroid2586
CD8+_Tcells8075.05
CardiacMyocytes3849.85
Caudatenucleus1068.35
Cerebellum924.2
CerebellumPeduncles2054.1
CiliaryGanglion706.9
CingulateCortex656.1
Colorectaladenocarcinoma8139.75
DorsalRootGanglion998.75
FetalThyroid3746.95
Fetalbrain2588.35
Fetalliver1845.45
Fetallung4382.85
GlobusPallidus349.5
Heart7892.5
Hypothalamus1719.5
Kidney1730.6
Leukemia_chronicMyelogenousK-5625652.05
Leukemia_promyelocytic-HL-606760.05
Leukemialymphoblastic(MOLT-4)5471.6
Liver6764.55
Lung7416.7
Lymphnode5040.1
Lymphoma_burkitts(Daudi)8767.6
Lymphoma_burkitts(Raji)13937.9
MedullaOblongata990.8
OccipitalLobe848.45
OlfactoryBulb2272.7
Ovary4313.6
Pancreas2865.65
PancreaticIslet3372.85
ParietalLobe789.6
Pituitary2293.5
Placenta3298.35
Pons882.45
PrefrontalCortex1634.2
Prostate5688.05
Salivarygland3641.85
SkeletalMuscle2241.45
Skin1979.35
SmoothMuscle5303.2
Spinalcord1656.15
SubthalamicNucleus554.3
SuperiorCervicalGanglion644.55
TemporalLobe1145.25
Testis2031.3
TestisGermCell1858
TestisIntersitial1232.9
TestisLeydigCell1179.6
TestisSeminiferousTubule1319.6
Thalamus1401.9
Thymus5332.7
Thyroid4475.85
Tongue2561.85
Tonsil4324.6
Trachea2034.65
TrigeminalGanglion1210.85
Uterus5518.65
UterusCorpus3667.45
WholeBlood4893.4
Wholebrain2518.2
colon2568.15
pineal_day1776.06
pineal_night1788.76
retina3423.3
small_intestine3537.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P208850
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala12.29 ± 0.31
Basal Forebrain12.71 ± 0.14
Basal Part of Pons12.27 ± 0.37
Cerebellar Cortex12.46 ± 0.26
Cerebellar Nuclei12.46 ± 0.46
Claustrum11.85 ± 0.53
Epithalamus12.56 ± 0.27
Frontal Lobe12.3 ± 0.34
Globus Pallidus13.35 ± 0.21
Hypothalamus12.62 ± 0.31
Insula12.29 ± 0.28
Limbic Lobe12.06 ± 0.38
Mesencephalon12.44 ± 0.46
Myelencephalon12.32 ± 0.39
Occipital Lobe12.01 ± 0.35
Parietal Lobe12.32 ± 0.37
Pontine Tegmentum12.41 ± 0.33
Striatum12.62 ± 0.44
Subthalamus12.5 ± 0.1
Temporal Lobe12.33 ± 0.32
Thalamus12.3 ± 0.33
White Matter13.24 ± 0.62
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rps16CBCerebellum35.37
62.43
Rps16CTXCerebral cortex100
100
Rps16HIPHippocampal region97.19
100
Rps16HPFHippocampal formation100
100
Rps16HYHypothalamus100
100
Rps16LSXLateral septal complex100
100
Rps16MBMidbrain100
100
Rps16MYMedulla93.35
100
Rps16OLFOlfactory bulb100
100
Rps16PPons85.63
100
Rps16PALPallidum99.38
100
Rps16RHPRetrohippocampal region100
100
Rps16sAMYStriatum-like amygdalar nuclei100
100
Rps16STRStriatum91.45
83.26
Rps16STRdStriatum dorsal region79.3
70.93
Rps16STRvStriatum ventral region100
90.78
Rps16THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00004406 11 16 26 KKTATAVAHCK Peptide Atlas
RS16_HUMAN_0 0 0 0 GGGHVAQIYAIR PRIDE
RS16_HUMAN_0 0 0 0 LLEPVLLLGK PRIDE
RS16_HUMAN_1 14 1 14 PSKGPLQSVQVFGR PRIDE
RS16_HUMAN_106 11 106 116 EIKDILIQYDR PRIDE
RS16_HUMAN_109 8 109 116 DILIQYDR PRIDE
RS16_HUMAN_116 9 116 124 RTLLVADPR PRIDE
RS16_HUMAN_117 8 117 124 TLLVADPR PRIDE
RS16_HUMAN_126 12 126 137 CESKKFGGPGAR PRIDE
RS16_HUMAN_127 12 127 138 CESKKFGGPGAR PRIDE
RS16_HUMAN_2 14 2 15 PSKGPLQSVQVFGR PRIDE
RS16_HUMAN_33 12 33 44 VNGRPLEMIEPR PRIDE
RS16_HUMAN_37 8 37 44 PLEMIEPR PRIDE
RS16_HUMAN_4 11 4 14 GPLQSVQVFGR PRIDE
RS16_HUMAN_50 10 50 59 LLEPVLLLGK PRIDE
RS16_HUMAN_50 12 50 61 LLEPVLLLGKER PRIDE
RS16_HUMAN_71 14 71 84 VKGGGHVAQIYAIR PRIDE
RS16_HUMAN_73 12 73 84 GGGHVAQIYAIR PRIDE
RS16_HUMAN_90 8 90 97 ALVAYYQK PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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