AutismKB 2.0

Annotation Detail for RPS17


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:RPS17 ( DBA4,MGC72007,RPS17L1,RPS17L2 )
Gene Full Name: ribosomal protein S17
Band: 15q25.2
Quick LinksEntrez ID:6218; OMIM: 180472; Uniprot ID:RS17_HUMAN; ENSEMBL ID: ENSG00000184779; HGNC ID: 10397
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body56 / 70761791
blastocyst114 / 623191829
fetus121 / 564012214
neonate19 / 31097610
infant3 / 23620127
juvenile17 / 55556305
adult857 / 1939121441
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor4 / 12794312
bladder carcinoma6 / 17475343
breast (mammary gland) tumor81 / 94178860
cervical tumor30 / 34366872
chondrosarcoma20 / 82823241
colorectal tumor42 / 114246367
esophageal tumor3 / 17290173
gastrointestinal tumor57 / 119369477
germ cell tumor163 / 263845617
glioma36 / 106883336
head and neck tumor29 / 136302212
kidney tumor42 / 68959609
leukemia33 / 95842344
liver tumor49 / 96359508
lung tumor158 / 1031271532
lymphoma117 / 717551630
non-neoplasia7 / 9725071
normal1225 / 3360307364
ovarian tumor24 / 76682312
pancreatic tumor114 / 1046161089
primitive neuroectodermal tumor of the CNS123 / 125680978
prostate cancer294 / 1026802863
retinoblastoma66 / 463561423
skin tumor272 / 1249492176
soft tissue/muscle tissue tumor130 / 1251911038
uterine tumor35 / 90257387
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland8 / 33197240
ascites15 / 40015374
bladder12 / 29757403
blood61 / 123478494
bone41 / 71655572
bone marrow71 / 488011454
brain199 / 1100989180
cervix32 / 48171664
connective tissue20 / 149255133
ear1 / 1621261
embryonic tissue303 / 2157221404
esophagus3 / 20209148
eye135 / 211054639
heart33 / 89626368
intestine64 / 234472272
kidney69 / 211777325
larynx1 / 2414541
liver72 / 207743346
lung183 / 336974543
lymph102 / 442702304
lymph node39 / 91610425
mammary gland89 / 153271580
mouth4 / 6705259
muscle111 / 1077151030
nerve3 / 15768190
ovary65 / 102051636
pancreas130 / 214812605
parathyroid1 / 2053948
pharynx9 / 41328217
pituitary gland10 / 16585602
placenta118 / 280825420
prostate406 / 1893452144
salivary gland19 / 20155942
skin308 / 2105741462
spleen18 / 53952333
stomach17 / 96619175
testis26 / 33044278
thymus9 / 81131110
thyroid12 / 47473252
tonsil153 / 169999000
trachea5 / 5241395
umbilical cord19 / 136801388
uterus113 / 232878485
vascular23 / 51780444
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 211487_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts13440.4
Adipocyte5188.9
AdrenalCortex6996.35
Adrenalgland4485.05
Amygdala1942.9
Appendix6531.5
AtrioventricularNode1933.8
BDCA4+_DentriticCells8714.1
Bonemarrow5931.15
BronchialEpithelialCells10070.55
CD105+_Endothelial10186.75
CD14+_Monocytes6497.3
CD19+_BCells(neg._sel.)10333.8
CD33+_Myeloid7744.85
CD34+11499.5
CD4+_Tcells11912.05
CD56+_NKCells8776.15
CD71+_EarlyErythroid5506.65
CD8+_Tcells10501.55
CardiacMyocytes8009.8
Caudatenucleus2523.1
Cerebellum1677.75
CerebellumPeduncles2940.15
CiliaryGanglion1295.4
CingulateCortex1367.55
Colorectaladenocarcinoma5736.5
DorsalRootGanglion2411.65
FetalThyroid7641.1
Fetalbrain5364.9
Fetalliver3607.9
Fetallung6508.1
GlobusPallidus1141.6
Heart2865.2
Hypothalamus3613.6
Kidney3135.8
Leukemia_chronicMyelogenousK-56210519.45
Leukemia_promyelocytic-HL-6012009.7
Leukemialymphoblastic(MOLT-4)8203.85
Liver2336.2
Lung4891.1
Lymphnode7207.9
Lymphoma_burkitts(Daudi)17579.55
Lymphoma_burkitts(Raji)12469.55
MedullaOblongata1825.75
OccipitalLobe1982.05
OlfactoryBulb3945.95
Ovary5850.65
Pancreas4981.6
PancreaticIslet8254.05
ParietalLobe1605.85
Pituitary5665.6
Placenta3819.65
Pons1498.45
PrefrontalCortex3322.7
Prostate5734.15
Salivarygland5895.75
SkeletalMuscle1959
Skin4136.95
SmoothMuscle9955.3
Spinalcord3903.35
SubthalamicNucleus1771.85
SuperiorCervicalGanglion1389.75
TemporalLobe2251.75
Testis2830.45
TestisGermCell2832.35
TestisIntersitial1912.55
TestisLeydigCell3232.25
TestisSeminiferousTubule3167.9
Thalamus2945.4
Thymus7176.1
Thyroid4848.05
Tongue5397.65
Tonsil7099.65
Trachea3757.15
TrigeminalGanglion2341.65
Uterus4729.6
UterusCorpus6496.6
WholeBlood7313.8
Wholebrain2604.3
colon4677.7
pineal_day3331.14
pineal_night3025.2
retina5922.6
small_intestine4870.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_11628_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala11.3 ± 0.23
Basal Forebrain11.34 ± 0.1
Basal Part of Pons10.95 ± 0.23
Cerebellar Cortex11.03 ± 0.17
Cerebellar Nuclei11.08 ± 0.35
Claustrum10.74 ± 0.3
Epithalamus11.11 ± 0.25
Frontal Lobe10.99 ± 0.27
Globus Pallidus11.93 ± 0.15
Hypothalamus11.19 ± 0.32
Insula11.03 ± 0.26
Limbic Lobe10.95 ± 0.27
Mesencephalon11.1 ± 0.36
Myelencephalon11.05 ± 0.29
Occipital Lobe10.84 ± 0.26
Parietal Lobe11.05 ± 0.26
Pontine Tegmentum11.1 ± 0.27
Striatum11.25 ± 0.23
Subthalamus11.05 ± 0.11
Temporal Lobe11.12 ± 0.25
Thalamus10.97 ± 0.26
White Matter11.77 ± 0.43
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rps17CBCerebellum15.54
20.8
Rps17CTXCerebral cortex5.27
3.93
Rps17HIPHippocampal region18.72
21.59
Rps17HPFHippocampal formation13.9
14.33
Rps17HYHypothalamus4.44
3.54
Rps17LSXLateral septal complex2.69
1.91
Rps17MBMidbrain5.99
6.03
Rps17MYMedulla8.78
9.5
Rps17OLFOlfactory bulb3.8
3.59
Rps17PPons5.23
5.74
Rps17PALPallidum3.74
3.45
Rps17RHPRetrohippocampal region5
3.75
Rps17sAMYStriatum-like amygdalar nuclei1.56
1.09
Rps17STRStriatum1.99
1.7
Rps17STRdStriatum dorsal region1.95
1.87
Rps17STRvStriatum ventral region2.16
1.43
Rps17THThalamus5.25
5.1
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00005075 22 108 129 LLDFGSLSNLQVTQPTVGMNFK Peptide Atlas
RS17_HUMAN_107 22 107 128 LLDFGSLSNLQVTQPTVGMNFK PRIDE
RS17_HUMAN_14 9 14 22 VIIEKYYTR PRIDE
RS17_HUMAN_23 10 23 32 LGNDFHTNKR PRIDE
RS17_HUMAN_32 13 32 44 RVCEEIAIIPSKK PRIDE
RS17_HUMAN_33 11 33 43 VCEEIAIIPSK PRIDE
RS17_HUMAN_33 12 33 44 VCEEIAIIPSKK PRIDE
RS17_HUMAN_49 10 49 58 IAGYVTHLMK PRIDE
RS17_HUMAN_6 9 6 14 TKTVKKAAR PRIDE
RS17_HUMAN_80 27 80 106 RDNYVPEVSALDQEIIEVDPDTKEMLK PRIDE
RS17_HUMAN_81 22 81 102 DNYVPEVSALDQEIIEVDPDTK PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved