AutismKB 2.0

Annotation Detail for RPS29


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Basic Information Top
Gene Symbol:RPS29 ( - )
Gene Full Name: ribosomal protein S29
Band: 14q21.3
Quick LinksEntrez ID:6235; OMIM: 603633; Uniprot ID:RS29_HUMAN; ENSEMBL ID: ENSG00000213741; HGNC ID: 10419
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body17 / 70761240
blastocyst145 / 623192326
fetus153 / 564012271
neonate11 / 31097353
infant4 / 23620169
juvenile12 / 55556215
adult431 / 1939121222
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor3 / 12794234
bladder carcinoma0 / 174750 
breast (mammary gland) tumor9 / 9417895
cervical tumor10 / 34366290
chondrosarcoma0 / 828230 
colorectal tumor11 / 11424696
esophageal tumor5 / 17290289
gastrointestinal tumor41 / 119369343
germ cell tumor32 / 263845121
glioma12 / 106883112
head and neck tumor11 / 13630280
kidney tumor13 / 68959188
leukemia24 / 95842250
liver tumor50 / 96359518
lung tumor12 / 103127116
lymphoma10 / 71755139
non-neoplasia1 / 9725010
normal1205 / 3360307358
ovarian tumor4 / 7668252
pancreatic tumor14 / 104616133
primitive neuroectodermal tumor of the CNS9 / 12568071
prostate cancer215 / 1026802093
retinoblastoma4 / 4635686
skin tumor8 / 12494964
soft tissue/muscle tissue tumor17 / 125191135
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland8 / 33197240
ascites13 / 40015324
bladder2 / 2975767
blood38 / 123478307
bone14 / 71655195
bone marrow82 / 488011680
brain111 / 1100989100
cervix10 / 48171207
connective tissue6 / 14925540
ear8 / 16212493
embryonic tissue417 / 2157221933
esophagus5 / 20209247
eye36 / 211054170
heart46 / 89626513
intestine41 / 234472174
kidney23 / 211777108
larynx0 / 241450 
liver109 / 207743524
lung34 / 336974100
lymph3 / 4427067
lymph node24 / 91610261
mammary gland14 / 15327191
mouth11 / 67052164
muscle44 / 107715408
nerve2 / 15768126
ovary8 / 10205178
pancreas26 / 214812121
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland12 / 16585723
placenta9 / 28082532
prostate248 / 1893451309
salivary gland4 / 20155198
skin13 / 21057461
spleen10 / 53952185
stomach31 / 96619320
testis30 / 33044290
thymus33 / 81131406
thyroid12 / 47473252
tonsil7 / 16999411
trachea0 / 524130 
umbilical cord11 / 13680804
uterus25 / 232878107
vascular35 / 51780675
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201094_at
Cell line Expression level Expression bar
721_B_lymphoblasts10191.1
Adipocyte5450.95
AdrenalCortex5916.45
Adrenalgland4746.8
Amygdala2205.65
Appendix4803.8
AtrioventricularNode1652.2
BDCA4+_DentriticCells12111.75
Bonemarrow6312.7
BronchialEpithelialCells11702.7
CD105+_Endothelial11103.85
CD14+_Monocytes10628.6
CD19+_BCells(neg._sel.)16842.95
CD33+_Myeloid11575
CD34+13330.55
CD4+_Tcells18396.6
CD56+_NKCells12938.55
CD71+_EarlyErythroid5100.8
CD8+_Tcells14887.7
CardiacMyocytes7456.65
Caudatenucleus3289.6
Cerebellum3264.1
CerebellumPeduncles5139.2
CiliaryGanglion1312.65
CingulateCortex1757.45
Colorectaladenocarcinoma2916.35
DorsalRootGanglion2030.35
FetalThyroid7311.7
Fetalbrain6783.2
Fetalliver4953.35
Fetallung5588.6
GlobusPallidus1485.9
Heart6883.5
Hypothalamus3164.55
Kidney3954.15
Leukemia_chronicMyelogenousK-5628826.65
Leukemia_promyelocytic-HL-6011221.3
Leukemialymphoblastic(MOLT-4)9243.6
Liver5865.9
Lung8834.05
Lymphnode10615.5
Lymphoma_burkitts(Daudi)11750.05
Lymphoma_burkitts(Raji)10316.65
MedullaOblongata2083.6
OccipitalLobe2919.5
OlfactoryBulb3937.45
Ovary6089.5
Pancreas4330.9
PancreaticIslet7118.55
ParietalLobe2490.9
Pituitary6283.65
Placenta5188.75
Pons2048.9
PrefrontalCortex3295.35
Prostate7117.3
Salivarygland7634.05
SkeletalMuscle2578.95
Skin4583.1
SmoothMuscle10525.45
Spinalcord3402.1
SubthalamicNucleus2103.7
SuperiorCervicalGanglion1034.1
TemporalLobe2663.15
Testis6593.45
TestisGermCell5806.9
TestisIntersitial4687.95
TestisLeydigCell4759.85
TestisSeminiferousTubule4306.05
Thalamus3071.8
Thymus9841.05
Thyroid5725.25
Tongue5866.5
Tonsil9889.3
Trachea5087.9
TrigeminalGanglion2016.25
Uterus5480.3
UterusCorpus5422.05
WholeBlood11650.4
Wholebrain4534.85
colon6227.3
pineal_day4902.74
pineal_night5357.04
retina5682.75
small_intestine6401.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10472_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala10.82 ± 0.3
Basal Forebrain11.2 ± 0.11
Basal Part of Pons10.79 ± 0.32
Cerebellar Cortex10.78 ± 0.28
Cerebellar Nuclei10.96 ± 0.43
Claustrum10.42 ± 0.49
Epithalamus10.54 ± 0.4
Frontal Lobe10.78 ± 0.36
Globus Pallidus11.93 ± 0.26
Hypothalamus11.14 ± 0.36
Insula10.82 ± 0.3
Limbic Lobe10.61 ± 0.36
Mesencephalon10.94 ± 0.5
Myelencephalon10.79 ± 0.4
Occipital Lobe10.48 ± 0.37
Parietal Lobe10.81 ± 0.34
Pontine Tegmentum10.92 ± 0.36
Striatum11.03 ± 0.31
Subthalamus11.1 ± 0.18
Temporal Lobe10.88 ± 0.35
Thalamus10.81 ± 0.33
White Matter11.68 ± 0.49
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00008905 7 34 40 YGLNMCR Peptide Atlas
RS29_HUMAN_1 11 1 11 GHQQLYWSHPR PRIDE
RS29_HUMAN_44 12 44 55 QYAKDIGFIKLD PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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