AutismKB 2.0

Annotation Detail for CLIP1


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:CLIP1 ( CLIP,CLIP-170,CLIP170,CYLN1,MGC131604,RSN )
Gene Full Name: CAP-GLY domain containing linker protein 1
Band: 12q24.31
Quick LinksEntrez ID:6249; OMIM: 179838; Uniprot ID:CLIP1_HUMAN; ENSEMBL ID: ENSG00000130779; HGNC ID: 10461
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body7 / 7076198
blastocyst1 / 6231916
fetus16 / 56401228
neonate0 / 310970 
infant0 / 236200 
juvenile4 / 5555671
adult136 / 193912170
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor5 / 9417853
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor8 / 11424670
esophageal tumor2 / 17290115
gastrointestinal tumor9 / 11936975
germ cell tumor11 / 26384541
glioma4 / 10688337
head and neck tumor20 / 136302146
kidney tumor1 / 6895914
leukemia5 / 9584252
liver tumor4 / 9635941
lung tumor3 / 10312729
lymphoma2 / 7175527
non-neoplasia2 / 9725020
normal193 / 336030757
ovarian tumor2 / 7668226
pancreatic tumor9 / 10461686
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites1 / 4001524
bladder1 / 2975733
blood6 / 12347848
bone1 / 7165513
bone marrow2 / 4880140
brain50 / 110098945
cervix0 / 481710 
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus2 / 2020998
eye4 / 21105418
heart4 / 8962644
intestine12 / 23447251
kidney15 / 21177770
larynx4 / 24145165
liver13 / 20774362
lung20 / 33697459
lymph2 / 4427045
lymph node6 / 9161065
mammary gland9 / 15327158
mouth8 / 67052119
muscle10 / 10771592
nerve1 / 1576863
ovary1 / 1020519
pancreas11 / 21481251
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland2 / 16585120
placenta36 / 280825128
prostate4 / 18934521
salivary gland0 / 201550 
skin17 / 21057480
spleen3 / 5395255
stomach10 / 96619103
testis14 / 33044242
thymus1 / 8113112
thyroid8 / 47473168
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus17 / 23287872
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 210716_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts8
Adipocyte6.55
AdrenalCortex6.9
Adrenalgland5.45
Amygdala7.05
Appendix8.25
AtrioventricularNode5
BDCA4+_DentriticCells6.4
Bonemarrow6.4
BronchialEpithelialCells6.35
CD105+_Endothelial6.45
CD14+_Monocytes6.8
CD19+_BCells(neg._sel.)6.6
CD33+_Myeloid8.25
CD34+7.65
CD4+_Tcells6.85
CD56+_NKCells7.7
CD71+_EarlyErythroid6.15
CD8+_Tcells6.2
CardiacMyocytes8.35
Caudatenucleus6.7
Cerebellum6.1
CerebellumPeduncles9.2
CiliaryGanglion4.7
CingulateCortex6.95
Colorectaladenocarcinoma6.45
DorsalRootGanglion5
FetalThyroid6.6
Fetalbrain6.55
Fetalliver5.75
Fetallung5.15
GlobusPallidus5.45
Heart8.2
Hypothalamus7.25
Kidney5.4
Leukemia_chronicMyelogenousK-5625.85
Leukemia_promyelocytic-HL-605.8
Leukemialymphoblastic(MOLT-4)5.2
Liver8.55
Lung7.05
Lymphnode5.55
Lymphoma_burkitts(Daudi)8.35
Lymphoma_burkitts(Raji)9
MedullaOblongata6.3
OccipitalLobe6.2
OlfactoryBulb5.2
Ovary4.3
Pancreas5.25
PancreaticIslet7
ParietalLobe7.35
Pituitary9.6
Placenta7.15
Pons6.6
PrefrontalCortex8.75
Prostate7.3
Salivarygland5.95
SkeletalMuscle9
Skin6.1
SmoothMuscle7.35
Spinalcord7.7
SubthalamicNucleus6
SuperiorCervicalGanglion9.4
TemporalLobe6.3
Testis5.55
TestisGermCell5.45
TestisIntersitial5.45
TestisLeydigCell6.95
TestisSeminiferousTubule5.6
Thalamus6.9
Thymus5.05
Thyroid8.3
Tongue7.9
Tonsil6.4
Trachea5.45
TrigeminalGanglion10.75
Uterus8.9
UterusCorpus6.5
WholeBlood11.55
Wholebrain5.3
colon6.45
pineal_day8.12
pineal_night8.04
retina7.925
small_intestine6.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P306425
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.62 ± 0.52
Basal Forebrain7.85 ± 0.18
Basal Part of Pons7.5 ± 0.28
Cerebellar Cortex8.31 ± 0.27
Cerebellar Nuclei7.44 ± 0.43
Claustrum7.64 ± 0.51
Epithalamus7.75 ± 0.61
Frontal Lobe7.79 ± 0.38
Globus Pallidus7.66 ± 0.24
Hypothalamus7.58 ± 0.3
Insula7.7 ± 0.5
Limbic Lobe7.99 ± 0.32
Mesencephalon7.81 ± 0.42
Myelencephalon7.76 ± 0.37
Occipital Lobe7.98 ± 0.35
Parietal Lobe7.84 ± 0.34
Pontine Tegmentum7.78 ± 0.36
Striatum7.65 ± 0.34
Subthalamus7.35 ± 0.59
Temporal Lobe7.83 ± 0.28
Thalamus7.75 ± 0.35
White Matter7.37 ± 0.22
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CLIP1_HUMAN_121 6 121 126 PSKLTR PRIDE
CLIP1_HUMAN_126 18 126 143 KVQAEDEANGLQTTPASR PRIDE
CLIP1_HUMAN_178 13 178 190 EPSATPPISNLTK PRIDE
CLIP1_HUMAN_380 16 380 395 ATSHVGEIEQELALAR PRIDE
CLIP1_HUMAN_848 13 848 860 FAEASEEAVSVQR PRIDE
CLIP1_HUMAN_929 13 929 941 NSSQLTKMNDELR PRIDE
PAp00035616 18 657 674 LDYQHEIENLQNQQDSER Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved