AutismKB 2.0

Annotation Detail for RXRA


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Basic Information Top
Gene Symbol:RXRA ( FLJ00280,FLJ00318,FLJ16020,FLJ16733,MGC102720,NR2B1 )
Gene Full Name: retinoid X receptor, alpha
Band: 9q34.2
Quick LinksEntrez ID:6256; OMIM: 180245; Uniprot ID:RXRA_HUMAN; ENSEMBL ID: ENSG00000186350; HGNC ID: 10477
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body8 / 70761113
blastocyst1 / 6231916
fetus40 / 56401270
neonate0 / 310970 
infant1 / 2362042
juvenile0 / 555560 
adult124 / 193912163
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor5 / 9417853
cervical tumor1 / 3436629
chondrosarcoma14 / 82823169
colorectal tumor9 / 11424678
esophageal tumor1 / 1729057
gastrointestinal tumor1 / 1193698
germ cell tumor17 / 26384564
glioma24 / 106883224
head and neck tumor6 / 13630244
kidney tumor1 / 6895914
leukemia11 / 95842114
liver tumor1 / 9635910
lung tumor6 / 10312758
lymphoma0 / 717550 
non-neoplasia8 / 9725082
normal162 / 336030748
ovarian tumor6 / 7668278
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS6 / 12568047
prostate cancer22 / 102680214
retinoblastoma1 / 4635621
skin tumor4 / 12494932
soft tissue/muscle tissue tumor11 / 12519187
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland0 / 331970 
ascites1 / 4001524
bladder2 / 2975767
blood11 / 12347889
bone9 / 71655125
bone marrow1 / 4880120
brain40 / 110098936
cervix1 / 4817120
connective tissue7 / 14925546
ear0 / 162120 
embryonic tissue15 / 21572269
esophagus1 / 2020949
eye17 / 21105480
heart4 / 8962644
intestine15 / 23447263
kidney6 / 21177728
larynx3 / 24145124
liver5 / 20774324
lung29 / 33697486
lymph0 / 442700 
lymph node3 / 9161032
mammary gland6 / 15327139
mouth0 / 670520 
muscle12 / 107715111
nerve0 / 157680 
ovary7 / 10205168
pancreas10 / 21481246
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta26 / 28082592
prostate26 / 189345137
salivary gland2 / 2015599
skin13 / 21057461
spleen2 / 5395237
stomach0 / 966190 
testis4 / 33044212
thymus0 / 811310 
thyroid5 / 47473105
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus16 / 23287868
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202426_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts33.65
Adipocyte8.2
AdrenalCortex9.7
Adrenalgland7.25
Amygdala8.75
Appendix8.65
AtrioventricularNode7.75
BDCA4+_DentriticCells9.9
Bonemarrow17.35
BronchialEpithelialCells8.7
CD105+_Endothelial13.2
CD14+_Monocytes106.9
CD19+_BCells(neg._sel.)7.55
CD33+_Myeloid19.45
CD34+11.55
CD4+_Tcells9.35
CD56+_NKCells16.8
CD71+_EarlyErythroid173.75
CD8+_Tcells7
CardiacMyocytes9.95
Caudatenucleus7.85
Cerebellum7.05
CerebellumPeduncles9.75
CiliaryGanglion6.35
CingulateCortex8.9
Colorectaladenocarcinoma8.4
DorsalRootGanglion6.85
FetalThyroid7.55
Fetalbrain8.05
Fetalliver16.75
Fetallung7.15
GlobusPallidus6.5
Heart15.8
Hypothalamus9.05
Kidney7.55
Leukemia_chronicMyelogenousK-5627.8
Leukemia_promyelocytic-HL-606.8
Leukemialymphoblastic(MOLT-4)6.1
Liver24.65
Lung8.45
Lymphnode6.9
Lymphoma_burkitts(Daudi)11.1
Lymphoma_burkitts(Raji)12.1
MedullaOblongata7.5
OccipitalLobe8.25
OlfactoryBulb6.8
Ovary6.05
Pancreas7.25
PancreaticIslet10
ParietalLobe9.1
Pituitary9.9
Placenta13.2
Pons10.9
PrefrontalCortex9.9
Prostate9.85
Salivarygland7.05
SkeletalMuscle17.8
Skin8.6
SmoothMuscle8.75
Spinalcord9.3
SubthalamicNucleus8.1
SuperiorCervicalGanglion12
TemporalLobe8.2
Testis7.3
TestisGermCell6
TestisIntersitial7.25
TestisLeydigCell8.85
TestisSeminiferousTubule7.85
Thalamus8.65
Thymus5.15
Thyroid12.3
Tongue9.2
Tonsil8.35
Trachea7.05
TrigeminalGanglion10.45
Uterus6.1
UterusCorpus9.85
WholeBlood80.65
Wholebrain6.95
colon11.7
pineal_day10.32
pineal_night9.62
retina13.6
small_intestine8.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P219176
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6 ± 0.39
Basal Forebrain6 ± 0.38
Basal Part of Pons5.63 ± 0.26
Cerebellar Cortex5.51 ± 0.3
Cerebellar Nuclei5.87 ± 0.37
Claustrum6.12 ± 0.33
Epithalamus5.51 ± 0.34
Frontal Lobe6.05 ± 0.37
Globus Pallidus6.05 ± 0.27
Hypothalamus5.67 ± 0.34
Insula6 ± 0.39
Limbic Lobe6.03 ± 0.42
Mesencephalon5.96 ± 0.38
Myelencephalon5.98 ± 0.42
Occipital Lobe5.61 ± 0.5
Parietal Lobe5.77 ± 0.32
Pontine Tegmentum5.86 ± 0.42
Striatum6.07 ± 0.38
Subthalamus5.96 ± 0.25
Temporal Lobe6.03 ± 0.4
Thalamus6.04 ± 0.36
White Matter5.02 ± 0.59
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
RxraCBCerebellum4.66
3.97
RxraCTXCerebral cortex0.93
0.74
RxraHIPHippocampal region1.76
0.98
RxraHPFHippocampal formation1.57
0.91
RxraHYHypothalamus1.33
0.81
RxraLSXLateral septal complex0.69
0.46
RxraMBMidbrain1.36
1.08
RxraMYMedulla5.8
5.56
RxraOLFOlfactory bulb3.63
2.49
RxraPPons2.84
2.66
RxraPALPallidum1.1
0.89
RxraRHPRetrohippocampal region1.01
0.67
RxrasAMYStriatum-like amygdalar nuclei7.18
3.18
RxraSTRStriatum1.12
0.59
RxraSTRdStriatum dorsal region0.32
0.22
RxraSTRvStriatum ventral region1.31
0.7
RxraTHThalamus1.52
1.17
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00010394 11 146 156 HYGVYSCEGCK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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