AutismKB 2.0

Annotation Detail for S100A11


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:S100A11 ( MLN70,S100C )
Gene Full Name: S100 calcium binding protein A11
Band: 1q21.3
Quick LinksEntrez ID:6282; OMIM: 603114; Uniprot ID:S10AB_HUMAN; ENSEMBL ID: ENSG00000163191; HGNC ID: 10488
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body38 / 70761537
blastocyst25 / 62319401
fetus46 / 56401281
neonate4 / 31097128
infant2 / 2362084
juvenile0 / 555560 
adult446 / 1939121230
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma27 / 174751545
breast (mammary gland) tumor46 / 94178488
cervical tumor3 / 3436687
chondrosarcoma9 / 82823108
colorectal tumor50 / 114246437
esophageal tumor1 / 1729057
gastrointestinal tumor41 / 119369343
germ cell tumor13 / 26384549
glioma13 / 106883121
head and neck tumor40 / 136302293
kidney tumor26 / 68959377
leukemia11 / 95842114
liver tumor12 / 96359124
lung tumor32 / 103127310
lymphoma1 / 7175513
non-neoplasia8 / 9725082
normal477 / 3360307141
ovarian tumor31 / 76682404
pancreatic tumor42 / 104616401
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer22 / 102680214
retinoblastoma0 / 463560 
skin tumor20 / 124949160
soft tissue/muscle tissue tumor25 / 125191199
uterine tumor17 / 90257188
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland2 / 3319760
ascites16 / 40015399
bladder29 / 29757974
blood11 / 12347889
bone15 / 71655209
bone marrow11 / 48801225
brain24 / 110098921
cervix5 / 48171103
connective tissue7 / 14925546
ear0 / 162120 
embryonic tissue71 / 215722329
esophagus1 / 2020949
eye23 / 211054108
heart19 / 89626211
intestine65 / 234472277
kidney38 / 211777179
larynx17 / 24145704
liver14 / 20774367
lung83 / 336974246
lymph1 / 4427022
lymph node14 / 91610152
mammary gland68 / 153271443
mouth14 / 67052208
muscle9 / 10771583
nerve0 / 157680 
ovary34 / 102051333
pancreas49 / 214812228
parathyroid7 / 20539340
pharynx16 / 41328387
pituitary gland0 / 165850 
placenta60 / 280825213
prostate40 / 189345211
salivary gland6 / 20155297
skin46 / 210574218
spleen6 / 53952111
stomach22 / 96619227
testis9 / 33044227
thymus0 / 811310 
thyroid7 / 47473147
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord4 / 13680292
uterus49 / 232878210
vascular8 / 51780154
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 200660_at
Cell line Expression level Expression bar
721_B_lymphoblasts463.65
Adipocyte1641.55
AdrenalCortex35
Adrenalgland101.55
Amygdala24.7
Appendix68.35
AtrioventricularNode77.75
BDCA4+_DentriticCells693.95
Bonemarrow401.55
BronchialEpithelialCells3134
CD105+_Endothelial93.2
CD14+_Monocytes2598.25
CD19+_BCells(neg._sel.)37.95
CD33+_Myeloid2916.7
CD34+57.4
CD4+_Tcells174.1
CD56+_NKCells608.1
CD71+_EarlyErythroid11.5
CD8+_Tcells94.85
CardiacMyocytes2494.45
Caudatenucleus18.55
Cerebellum10
CerebellumPeduncles15.5
CiliaryGanglion90.5
CingulateCortex13.35
Colorectaladenocarcinoma3194.9
DorsalRootGanglion75.7
FetalThyroid334.5
Fetalbrain12.9
Fetalliver23.9
Fetallung505.9
GlobusPallidus10.6
Heart502.6
Hypothalamus28.25
Kidney179.25
Leukemia_chronicMyelogenousK-562426.1
Leukemia_promyelocytic-HL-609.15
Leukemialymphoblastic(MOLT-4)10.5
Liver106.75
Lung1878.55
Lymphnode266.05
Lymphoma_burkitts(Daudi)17.45
Lymphoma_burkitts(Raji)12
MedullaOblongata12
OccipitalLobe11.85
OlfactoryBulb138.3
Ovary65.45
Pancreas534.35
PancreaticIslet564.45
ParietalLobe18.6
Pituitary103.15
Placenta2384
Pons18.9
PrefrontalCortex25.3
Prostate890.75
Salivarygland338.5
SkeletalMuscle24.3
Skin303.1
SmoothMuscle2139.85
Spinalcord104
SubthalamicNucleus10.5
SuperiorCervicalGanglion43.35
TemporalLobe12.45
Testis47.35
TestisGermCell56.8
TestisIntersitial26.8
TestisLeydigCell56.15
TestisSeminiferousTubule38.1
Thalamus25.3
Thymus434.45
Thyroid329.8
Tongue1690.9
Tonsil935.15
Trachea650.8
TrigeminalGanglion76.45
Uterus251.65
UterusCorpus176.35
WholeBlood6358.05
Wholebrain13.45
colon158.65
pineal_day34.2
pineal_night29.66
retina300.925
small_intestine206.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P126593
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3 ± 0.7
Basal Forebrain2.41 ± 0.52
Basal Part of Pons3.25 ± 0.73
Cerebellar Cortex2.41 ± 0.56
Cerebellar Nuclei4.04 ± 0.75
Claustrum2.53 ± 0.74
Epithalamus4.09 ± 0.4
Frontal Lobe2.92 ± 0.71
Globus Pallidus4.34 ± 0.57
Hypothalamus3.11 ± 1.08
Insula2.9 ± 0.69
Limbic Lobe2.59 ± 0.71
Mesencephalon2.97 ± 0.74
Myelencephalon3 ± 0.74
Occipital Lobe2.9 ± 0.65
Parietal Lobe2.78 ± 0.81
Pontine Tegmentum2.99 ± 0.65
Striatum3.7 ± 0.69
Subthalamus3.26 ± 0.36
Temporal Lobe2.82 ± 0.7
Thalamus2.94 ± 0.67
White Matter3.58 ± 0.51
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
S100a11CBCerebellum0
0
S100a11CTXCerebral cortex0
0
S100a11HIPHippocampal region0
0
S100a11HPFHippocampal formation0
0
S100a11HYHypothalamus0
0
S100a11LSXLateral septal complex0
0
S100a11MBMidbrain0
0
S100a11MYMedulla0
0
S100a11OLFOlfactory bulb0
0
S100a11PPons0
0
S100a11PALPallidum0
0
S100a11RHPRetrohippocampal region0
0
S100a11sAMYStriatum-like amygdalar nuclei0
0
S100a11STRStriatum0
0
S100a11STRdStriatum dorsal region0
0
S100a11STRvStriatum ventral region0
0
S100a11THThalamus0
0
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00001073 11 13 23 CIESLIAVFQK Peptide Atlas
S10AB_HUMAN_0 0 0 0 CIESLIAVFQK PRIDE
S10AB_HUMAN_0 0 0 0 DGYNYTLSK PRIDE
S10AB_HUMAN_0 0 0 0 TEFLSFMNTELAAFTK PRIDE
S10AB_HUMAN_0 0 0 0 YAGKDGYNYTLSK PRIDE
S10AB_HUMAN_12 11 12 22 CIESLIAVFQK PRIDE
S10AB_HUMAN_12 15 12 26 CIESLIAVFQKYAGK PRIDE
S10AB_HUMAN_2 11 2 12 AKISSPTETER PRIDE
S10AB_HUMAN_23 13 23 35 YAGKDGYNYTLSK PRIDE
S10AB_HUMAN_23 29 23 51 YAGKDGYNYTLSKTEFLSFMNTELAAFTK PRIDE
S10AB_HUMAN_27 25 27 51 DGYNYTLSKTEFLSFMNTELAAFTK PRIDE
S10AB_HUMAN_27 9 27 35 DGYNYTLSK PRIDE
S10AB_HUMAN_28 9 28 36 DGYNYTLSK PRIDE
S10AB_HUMAN_3 20 3 22 ISSPTETERCIESLIAVFQK PRIDE
S10AB_HUMAN_3 9 3 11 ISSPTETER PRIDE
S10AB_HUMAN_36 16 36 51 TEFLSFMNTELAAFTK PRIDE
S10AB_HUMAN_37 16 37 52 TEFLSFMNTELAAFTK PRIDE
S10AB_HUMAN_4 9 4 12 ISSPTETER PRIDE
S10AB_HUMAN_52 10 52 61 NQKDPGVLDR PRIDE
S10AB_HUMAN_53 10 53 62 NQKDPGVLDR PRIDE
S10AB_HUMAN_56 7 56 62 DPGVLDR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved