Annotation Detail for SAFB
Basic Information Top
| Gene Symbol: | SAFB ( DKFZp779C1727,HAP,HET,SAF-B1,SAFB1 ) |
|---|---|
| Gene Full Name: | scaffold attachment factor B |
| Band: | 19p13.3 |
| Quick Links | Entrez ID:6294; OMIM: 602895; Uniprot ID:SAFB1_HUMAN; ENSEMBL ID: ENSG00000160633; HGNC ID: 10520 |
| Relate to Another Database: | SFARIGene; denovo-db |
Unigene EST- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 201747_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
 | ||
| 721_B_lymphoblasts | 58.1 |  |
| Adipocyte | 6.35 |  |
| AdrenalCortex | 6.9 | |
| Adrenalgland | 5.2 | |
| Amygdala | 6.75 | |
| Appendix | 6.5 | |
| AtrioventricularNode | 5.05 | |
| BDCA4+_DentriticCells | 31.7 |  |
| Bonemarrow | 6.4 | |
| BronchialEpithelialCells | 6.15 | |
| CD105+_Endothelial | 8.65 | |
| CD14+_Monocytes | 7.4 | |
| CD19+_BCells(neg._sel.) | 13.6 | |
| CD33+_Myeloid | 8.15 | |
| CD34+ | 23.4 | |
| CD4+_Tcells | 22.15 | |
| CD56+_NKCells | 30.1 | |
| CD71+_EarlyErythroid | 6.1 | |
| CD8+_Tcells | 20 | |
| CardiacMyocytes | 8.45 | |
| Caudatenucleus | 5.75 | |
| Cerebellum | 5.2 | |
| CerebellumPeduncles | 7.35 | |
| CiliaryGanglion | 4.65 | |
| CingulateCortex | 6.6 | |
| Colorectaladenocarcinoma | 7.45 | |
| DorsalRootGanglion | 5 | |
| FetalThyroid | 6.05 | |
| Fetalbrain | 6.35 | |
| Fetalliver | 5.6 | |
| Fetallung | 5.2 | |
| GlobusPallidus | 4.75 | |
| Heart | 8.15 | |
| Hypothalamus | 7 | |
| Kidney | 5.2 | |
| Leukemia_chronicMyelogenousK-562 | 5.8 | |
| Leukemia_promyelocytic-HL-60 | 5.7 | |
| Leukemialymphoblastic(MOLT-4) | 6.75 | |
| Liver | 8.55 | |
| Lung | 8.4 | |
| Lymphnode | 5.5 | |
| Lymphoma_burkitts(Daudi) | 8.25 | |
| Lymphoma_burkitts(Raji) | 11.45 | |
| MedullaOblongata | 5.9 | |
| OccipitalLobe | 5.75 | |
| OlfactoryBulb | 5.05 | |
| Ovary | 4.3 | |
| Pancreas | 5.2 | |
| PancreaticIslet | 6.85 | |
| ParietalLobe | 6.8 | |
| Pituitary | 7.45 | |
| Placenta | 6.6 | |
| Pons | 6.15 | |
| PrefrontalCortex | 7.95 | |
| Prostate | 12.25 | |
| Salivarygland | 5.15 | |
| SkeletalMuscle | 7.65 | |
| Skin | 4.9 | |
| SmoothMuscle | 6.95 | |
| Spinalcord | 6.65 | |
| SubthalamicNucleus | 5.9 | |
| SuperiorCervicalGanglion | 7.3 | |
| TemporalLobe | 6.2 | |
| Testis | 5.25 | |
| TestisGermCell | 5.5 | |
| TestisIntersitial | 5.4 | |
| TestisLeydigCell | 6.25 | |
| TestisSeminiferousTubule | 5.5 | |
| Thalamus | 6.5 | |
| Thymus | 7.05 | |
| Thyroid | 8.15 | |
| Tongue | 6.35 | |
| Tonsil | 6.25 | |
| Trachea | 5.2 | |
| TrigeminalGanglion | 6.45 | |
| Uterus | 6.15 | |
| UterusCorpus | 5.6 | |
| WholeBlood | 7 | |
| Wholebrain | 6.25 | |
| colon | 6.3 | |
| pineal_day | 8.16 | |
| pineal_night | 7.94 | |
| retina | 7.525 | |
| small_intestine | 6.15 | |
- Probe name: A_32_P164649
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.49 ± 0.26 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 9.26 ± 0.21 | |
| Basal Part of Pons | 9.28 ± 0.27 | |
| Cerebellar Cortex | 9.1 ± 0.27 | |
| Cerebellar Nuclei | 9.08 ± 0.14 | |
| Claustrum | 9.78 ± 0.38 | |
| Epithalamus | 9.02 ± 0.2 | |
| Frontal Lobe | 9.03 ± 0.33 | |
| Globus Pallidus | 9.63 ± 0.19 | |
| Hypothalamus | 8.93 ± 0.31 | |
| Insula | 9.06 ± 0.33 | |
| Limbic Lobe | 9.32 ± 0.34 | |
| Mesencephalon | 9.18 ± 0.33 | |
| Myelencephalon | 9.18 ± 0.28 | |
| Occipital Lobe | 9.39 ± 0.3 | |
| Parietal Lobe | 9.26 ± 0.35 | |
| Pontine Tegmentum | 9.12 ± 0.35 | |
| Striatum | 9.24 ± 0.36 | |
| Subthalamus | 9.08 ± 0.06 | |
| Temporal Lobe | 9.14 ± 0.31 | |
| Thalamus | 9.09 ± 0.27 | |
| White Matter | 10.1 ± 0.43 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Safb | CB | Cerebellum | 52.76 | |
| 68.48 | | |||
| Safb | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Safb | HIP | Hippocampal region | 76.7 | |
| 100 | | |||
| Safb | HPF | Hippocampal formation | 83.59 | |
| 100 | | |||
| Safb | HY | Hypothalamus | 48.57 | |
| 41.77 | | |||
| Safb | LSX | Lateral septal complex | 71.99 | |
| 57.9 | | |||
| Safb | MB | Midbrain | 66.11 | |
| 63.73 | | |||
| Safb | MY | Medulla | 47.65 | |
| 51.99 | | |||
| Safb | OLF | Olfactory bulb | 94.05 | |
| 88.31 | | |||
| Safb | P | Pons | 40.6 | |
| 42.02 | | |||
| Safb | PAL | Pallidum | 59.78 | |
| 58.3 | | |||
| Safb | RHP | Retrohippocampal region | 98.13 | |
| 88.86 | | |||
| Safb | sAMY | Striatum-like amygdalar nuclei | 87.66 | |
| 69.58 | | |||
| Safb | STR | Striatum | 78.93 | |
| 63.02 | | |||
| Safb | STRd | Striatum dorsal region | 76.74 | |
| 60.7 | | |||
| Safb | STRv | Striatum ventral region | 85.88 | |
| 68.99 | | |||
| Safb | TH | Thalamus | 78.62 | |
| 73.12 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00001485 | 15 | 448 | 462 | CYGFVTMSTAEEATK | Peptide Atlas |
| SAFB1_HUMAN_2 | 28 | 2 | 29 | AETLSGLGDSGAAGAAALSSASSETGTR | PRIDE |
| SAFB1_HUMAN_53 | 8 | 53 | 60 | NKSVLMER | PRIDE |